iRegulon: from a gene list to a gene regulatory network using large motif and track collections R Janky, A Verfaillie, H Imrichová, B Van de Sande, L Standaert, ... PLoS computational biology 10 (7), e1003731, 2014 | 840 | 2014 |
Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds M Naval-Sanchez, Q Nguyen, S McWilliam, LR Porto-Neto, R Tellam, ... Nature communications 9 (1), 859, 2018 | 105 | 2018 |
Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for … S Aerts, XJ Quan, A Claeys, M Naval Sanchez, P Tate, J Yan, BA Hassan PLoS biology 8 (7), e1000435, 2010 | 96 | 2010 |
TDP-43 loss-of-function causes neuronal loss due to defective steroid receptor-mediated gene program switching in Drosophila LV Broeck, M Naval-Sanchez, Y Adachi, D Diaper, P Dourlen, J Chapuis, ... Cell reports 3 (1), 160-172, 2013 | 86 | 2013 |
Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference D Potier, K Davie, G Hulselmans, MN Sanchez, L Haagen, D Koldere, ... Cell reports 9 (6), 2290-2303, 2014 | 82 | 2014 |
Nicotinamide riboside attenuates age-associated metabolic and functional changes in hematopoietic stem cells X Sun, B Cao, M Naval-Sanchez, T Pham, YBY Sun, B Williams, ... Nature communications 12 (1), 2665, 2021 | 73 | 2021 |
Evolution of sex determination loci in Atlantic salmon J Kijas, S McWilliam, M Naval Sanchez, P Kube, H King, B Evans, T Nome, ... Scientific Reports 8 (1), 5664, 2018 | 48 | 2018 |
Genome‐wide association reveals the locus responsible for four‐horned ruminant JW Kijas, T Hadfield, M Naval Sanchez, N Cockett Animal genetics 47 (2), 258-262, 2016 | 45 | 2016 |
Measurement of free zinc concentration in wine with AGNES E Companys, M Naval-Sánchez, N Martínez-Micaelo, J Puy, J Galceran Journal of agricultural and food chemistry 56 (18), 8296-8302, 2008 | 35 | 2008 |
Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions M Naval-Sánchez, D Potier, L Haagen, M Sánchez, S Munck, ... Genome research 23 (1), 74-88, 2013 | 33 | 2013 |
Systems Biology Reveals NR2F6 and TGFB1 as Key Regulators of Feed Efficiency in Beef Cattle PA Alexandre, M Naval-Sanchez, LR Porto-Neto, JBS Ferraz, A Reverter, ... Frontiers in Genetics 10, 230, 2019 | 32 | 2019 |
Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data QH Nguyen, RL Tellam, M Naval-Sanchez, LR Porto-Neto, W Barendse, ... Gigascience 7 (3), gix136, 2018 | 30 | 2018 |
Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB M Naval-Sánchez, LR Porto-Neto, DF Cardoso, BJ Hayes, HD Daetwyler, ... Genetics Selection Evolution 52, 1-19, 2020 | 28 | 2020 |
Changed patterns of genomic variation following recent domestication: selection sweeps in farmed Atlantic salmon M Naval-Sanchez, S McWilliam, B Evans, JM Yáñez, RD Houston, ... Frontiers in genetics 11, 264, 2020 | 24 | 2020 |
Chromatin accessibility and regulatory vocabulary across indicine cattle tissues PA Alexandre, M Naval-Sánchez, M Menzies, LT Nguyen, LR Porto-Neto, ... Genome biology 22, 1-20, 2021 | 23 | 2021 |
Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae A Allais-Bonnet, A Hintermann, MC Deloche, R Cornette, P Bardou, ... Molecular Biology and Evolution 38 (6), 2260-2272, 2021 | 20 | 2021 |
Amniotic ectoderm expansion in mouse occurs via distinct modes and requires SMAD5-mediated signalling MP Dobreva, V Abon Escalona, KA Lawson, MN Sanchez, LC Ponomarev, ... Development 145 (13), dev157222, 2018 | 18 | 2018 |
Using cisTargetX to Predict Transcriptional Targets and Networks in Drosophila D Potier, ZK Atak, MN Sanchez, C Herrmann, S Aerts Gene Regulatory Networks: Methods and Protocols, 291-314, 2012 | 18 | 2012 |
Nuclear receptors connect progenitor transcription factors to cell cycle control M Neto, M Naval-Sánchez, D Potier, PS Pereira, D Geerts, S Aerts, ... Scientific reports 7 (1), 4845, 2017 | 16 | 2017 |
Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein … M Naval-Sánchez, D Potier, G Hulselmans, V Christiaens, S Aerts Molecular biology and evolution 32 (9), 2441-2455, 2015 | 14 | 2015 |