| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1138 | 2018 |
| Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ... PeerJ 3, e1140, 2015 | 283 | 2015 |
| Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 250 | 2016 |
| The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea … HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ... Systematic Biology 63 (4), 457-479, 2014 | 181 | 2014 |
| Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013 | 153 | 2013 |
| Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression ML Bendall, M De Mulder, LP Iñiguez, A Lecanda-Sánchez, ... PLoS computational biology 15 (9), e1006453, 2019 | 128 | 2019 |
| Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall PloS one 10 (6), e0131819, 2015 | 118 | 2015 |
| Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry RA Heins, X Cheng, S Nath, K Deng, BP Bowen, DC Chivian, S Datta, ... ACS chemical biology 9 (9), 2082-2091, 2014 | 69 | 2014 |
| Evaluation of haplotype callers for next-generation sequencing of viruses A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ... Infection, Genetics and Evolution 82, 104277, 2020 | 47 | 2020 |
| Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1 ML Bendall, K Luong, KM Wetmore, M Blow, J Korlach, A Deutschbauer, ... Journal of bacteriology 195 (21), 4966-4974, 2013 | 46 | 2013 |
| Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses N Lewis-Rogers, ML Bendall, KA Crandall Molecular biology and evolution 26 (5), 969-981, 2009 | 44 | 2009 |
| Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis VK Shanmugam, D Jones, S McNish, ML Bendall, KA Crandall Clinical and experimental dermatology 44 (8), 882-892, 2019 | 43 | 2019 |
| SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements JL Marston, M Greenig, M Singh, ML Bendall, RRR Duarte, C Feschotte, ... JCI insight 6 (24), 2021 | 40 | 2021 |
| Locus-specific characterization of human endogenous retrovirus expression in prostate, breast, and colon cancers MC Steiner, JL Marston, LP Iñiguez, ML Bendall, KB Chiappinelli, ... Cancer research 81 (13), 3449-3460, 2021 | 33 | 2021 |
| Human endogenous retrovirus expression is associated with head and neck cancer and differential survival AR Kolbe, ML Bendall, AT Pearson, D Paul, DF Nixon, M Pérez-Losada, ... Viruses 12 (9), 956, 2020 | 31 | 2020 |
| Expression of human endogenous retroviruses in systemic lupus erythematosus: multiomic integration with gene expression N Stearrett, T Dawson, A Rahnavard, P Bachali, ML Bendall, C Zeng, ... Frontiers in immunology 12, 661437, 2021 | 25 | 2021 |
| A field guide to endogenous retrovirus regulatory networks N Dopkins, MM O’Mara, E Lawrence, T Fei, S Sandoval-Motta, DF Nixon, ... Molecular Cell 82 (20), 3763-3768, 2022 | 20 | 2022 |
| Long-read, whole-genome shotgun sequence data for five model organisms. Sci Data 1: 140045 KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ... | 17 | 2014 |
| HAPHPIPE: haplotype reconstruction and Phylodynamics for deep sequencing of Intrahost viral populations ML Bendall, KM Gibson, MC Steiner, U Rentia, M Pérez-Losada, ... Molecular biology and evolution 38 (4), 1677-1690, 2021 | 15 | 2021 |
| A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing KM Gibson, K Jair, AD Castel, ML Bendall, B Wilbourn, JA Jordan, ... Scientific Reports 10 (1), 1989, 2020 | 15 | 2020 |
Keith A. CrandallComputational Biology Institute, Department of Biostatistics & Bioinformatics, George WashingtonEmail verificata su gwu.edu