Accesso pubblico

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

J Dekker, MA Marti-Renom, LA Mirny

Nature Reviews Genetics 14 (6), 390-403, 2013

Mandati: US National Institutes of Health, Government of Spain

[PDF] oup.com

modbase, a database of annotated comparative protein structure models and associated resources

U Pieper, N Eswar, BM Webb, D Eramian, L Kelly, DT Barkan, H Carter, ...

Nucleic acids research 37 (suppl_1), D347-D354, 2009

Mandati: US National Institutes of Health

[PDF] ethernet.edu.et

Protein structure modeling with MODELLER

B Webb, A Sali

Functional Genomics, 39-54, 2017

Mandati: US National Institutes of Health

[HTML] cshlp.org

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation

F Le Dily, D Bau, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ...

Genes & development 28 (19), 2151-2162, 2014

Mandati: Government of Spain, Human Frontier Science Program

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

D Baù, A Sanyal, BR Lajoie, E Capriotti, M Byron, JB Lawrence, J Dekker, ...

Nature structural & molecular biology 18 (1), 107-114, 2011

Mandati: US National Institutes of Health

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming

R Stadhouders, E Vidal, F Serra, B Di Stefano, F Le Dily, J Quilez, ...

Nature genetics 50 (2), 238-249, 2018

Mandati: European Commission, Government of Spain

The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation

MA Umbarger, E Toro, MA Wright, GJ Porreca, D Bau, SH Hong, MJ Fero, ...

Molecular cell 44 (2), 252-264, 2011

Mandati: US National Institutes of Health, Government of Spain

[HTML] plos.org

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

F Serra, D Baù, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom

PLoS computational biology 13 (7), e1005665, 2017

Mandati: European Commission, Government of Spain, Human Frontier Science Program

[PDF] nejm.org

Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis

CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ...

New England journal of medicine 369 (3), 290-292, 2013

Mandati: UK Biotechnology and Biological Sciences Research Council, Chief Scientist …

Human pancreatic islet three-dimensional chromatin architecture provides insights into the genetics of type 2 diabetes

I Miguel-Escalada, S Bonàs-Guarch, I Cebola, J Ponsa-Cobas, ...

Nature genetics 51 (7), 1137-1148, 2019

Mandati: Netherlands Organisation for Scientific Research, UK Medical Research …

[HTML] plos.org

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ...

PLoS genetics 14 (12), e1007872, 2018

Mandati: US National Science Foundation, US Department of Defense, US National …

The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia

R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ...

Nature medicine 24 (6), 868-880, 2018

Mandati: Wellcome Trust, Worldwide Cancer Research, UK, Government of Spain, European …

Outcome of the first wwPDB hybrid/integrative methods task force workshop

A Sali, HM Berman, T Schwede, J Trewhella, G Kleywegt, SK Burley, ...

Structure 23 (7), 1156-1167, 2015

Mandati: US National Institutes of Health, UK Biotechnology and Biological Sciences …

[PDF] nature.com

LifeTime and improving European healthcare through cell-based interceptive medicine

N Rajewsky, G Almouzni, SA Gorski, S Aerts, I Amit, MG Bertero, C Bock, ...

Nature 587 (7834), 377-386, 2020

Mandati: Villum Foundation, Cancer Research UK, UK Medical Research Council, European …

Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization

A Kojic, A Cuadrado, M De Koninck, D Giménez-Llorente, ...

Nature structural & molecular biology 25 (6), 496-504, 2018

Mandati: Banking Foundation "la Caixa", European Commission, Government of Spain

[PDF] nature.com

Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

DI Cattoni, AM Cardozo Gizzi, M Georgieva, M Di Stefano, A Valeri, ...

Nature communications 8 (1), 1753, 2017

Mandati: National Institute of Health and Medical Research, France, European …

4D genome rewiring during oncogene-induced and replicative senescence

S Sati, B Bonev, Q Szabo, D Jost, P Bensadoun, F Serra, V Loubiere, ...

Molecular cell 78 (3), 522-538. e9, 2020

Mandati: US National Institutes of Health, National Institute of Health and Medical …

[PDF] academia.edu

Promoter bivalency favors an open chromatin architecture in embryonic stem cells

G Mas, E Blanco, C Ballaré, M Sansó, YG Spill, D Hu, Y Aoi, F Le Dily, ...

Nature genetics 50 (10), 1452-1462, 2018

Mandati: US National Institutes of Health, European Commission, Government of Spain

Three-dimensional genomic structure and cohesin occupancy correlate with transcriptional activity during spermatogenesis

C Vara, A Paytuví-Gallart, Y Cuartero, F Le Dily, F Garcia, J Salvà-Castro, ...

Cell reports 28 (2), 352-367. e9, 2019

Mandati: European Commission, Government of Spain