| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ... Nature 583 (7816), 459-468, 2020 | 4671 | 2020 |
| ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ... Methods in enzymology 487, 545-574, 2011 | 2028 | 2011 |
| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 1419 | 2017 |
| A simple physical model for binding energy hot spots in protein–protein complexes T Kortemme, D Baker Proceedings of the National Academy of Sciences 99 (22), 14116-14121, 2002 | 1000 | 2002 |
| The global phosphorylation landscape of SARS-CoV-2 infection M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Cell 182 (3), 685-712. e19, 2020 | 941 | 2020 |
| Helix propensities of the amino acids measured in alanine‐based peptides without helix‐stabilizing side‐chain interactions A Chakrabartty, T Kortemme, RL Baldwin Protein Science 3 (5), 843-852, 1994 | 817 | 1994 |
| Global landscape of HIV–human protein complexes S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ... Nature 481 (7381), 365-370, 2012 | 812 | 2012 |
| Computational alanine scanning of protein-protein interfaces T Kortemme, DE Kim, D Baker Science's STKE 2004 (219), pl2-pl2, 2004 | 686 | 2004 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 678 | 2020 |
| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 669 | 2020 |
| An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein–protein complexes T Kortemme, AV Morozov, D Baker Journal of molecular biology 326 (4), 1239-1259, 2003 | 664 | 2003 |
| Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs AE Palmer, M Giacomello, T Kortemme, SA Hires, V Lev-Ram, D Baker, ... Chemistry & biology 13 (5), 521-530, 2006 | 622 | 2006 |
| Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling DJ Mandell, EA Coutsias, T Kortemme Nature methods 6 (8), 551-552, 2009 | 527 | 2009 |
| Ionization− reactivity relationships for cysteine thiols in polypeptides G Bulaj, T Kortemme, DP Goldenberg Biochemistry 37 (25), 8965-8972, 1998 | 508 | 1998 |
| Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE) S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew, D Kuroda, J Xu, ... PloS one 8 (5), e63906, 2013 | 435 | 2013 |
| Design of a 20-amino acid, three-stranded β-sheet protein T Kortemme, M Ramı́rez-Alvarado, L Serrano Science 281 (5374), 253-256, 1998 | 427 | 1998 |
| Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities A Chakrabartty, T Kortemme, S Padmanabhan, RL Baldwin Biochemistry 32 (21), 5560-5565, 1993 | 417 | 1993 |
| Ionisation of Cysteine Residues at the Termini of Model α-Helical Peptides. Relevance to Unusual Thiol pKaValues in Proteins of the Thioredoxin Family T Kortemme, TE Creighton Journal of molecular biology 253 (5), 799-812, 1995 | 396 | 1995 |
| Computational redesign of protein-protein interaction specificity T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, ... Nature structural & molecular biology 11 (4), 371-379, 2004 | 391 | 2004 |
| Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction CA Smith, T Kortemme Journal of molecular biology 380 (4), 742-756, 2008 | 381 | 2008 |
David BakerUniversity of WashingtonEmail verificata su uw.edu
