| ChIP-nexus enables improved detection of in vivo transcription factor binding footprints Q He, J Johnston, J Zeitlinger Nature biotechnology 33 (4), 395-401, 2015 | 275 | 2015 |
| Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo M Lagha, JP Bothma, E Esposito, S Ng, L Stefanik, C Tsui, J Johnston, ... Cell 153 (5), 976-987, 2013 | 207 | 2013 |
| Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation Y Sun, CY Nien, K Chen, HY Liu, J Johnston, J Zeitlinger, C Rushlow Genome research 25 (11), 1703-1714, 2015 | 185 | 2015 |
| A global change in RNA polymerase II pausing during the Drosophila midblastula transition K Chen, J Johnston, W Shao, S Meier, C Staber, J Zeitlinger Elife 2, e00861, 2013 | 161 | 2013 |
| High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species Q He, AF Bardet, B Patton, J Purvis, J Johnston, A Paulson, M Gogol, ... Nature genetics 43 (5), 414-420, 2011 | 155 | 2011 |
| Poised RNA polymerase II changes over developmental time and prepares genes for future expression B Gaertner, J Johnston, K Chen, N Wallaschek, A Paulson, AS Garruss, ... Cell reports 2 (6), 1670-1683, 2012 | 118 | 2012 |
| TRF2, but not TBP, mediates the transcription of ribosomal protein genes YL Wang, SHC Duttke, K Chen, J Johnston, GA Kassavetis, J Zeitlinger, ... Genes & development 28 (14), 1550-1555, 2014 | 97 | 2014 |
| Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis N Koenecke, J Johnston, B Gaertner, M Natarajan, J Zeitlinger Genome Biology 17, 1-19, 2016 | 66 | 2016 |
| Drosophila poised enhancers are generated during tissue patterning with the help of repression N Koenecke, J Johnston, Q He, S Meier, J Zeitlinger Genome research 27 (1), 64-74, 2017 | 60 | 2017 |
| TATA and paused promoters active in differentiated tissues have distinct expression characteristics V Ramalingam, M Natarajan, J Johnston, J Zeitlinger Molecular Systems Biology 17 (2), e9866, 2021 | 22 | 2021 |
| DAMPs-activated neutrophil extracellular trap exacerbates sterile inflammatory liver injury Q He, J Johnston, J Zeitlinger, K City, K City Hepatology 33, 395-401, 2015 | 4 | 2015 |
| O24: Unveiling the power of HiFi genome sequencing: One test to rule them all? E Farrow, C Saunders, M Gibson, A Walter, ASA Cohen, J Alaimo, T Zion, ... Genetics in Medicine Open 2, 2024 | | 2024 |
| Single Cell Expression Analysis of Pediatric Bone Reveals Novel Cellular Heterogeneity E Farrow, T Brown, J Johnston, A Walter, M Gibson, T Pastinen, D Pacicca JOURNAL OF BONE AND MINERAL RESEARCH 35, 20-21, 2020 | | 2020 |
| Methods and kits for identifying polypeptide binding sites in a genome J Zeitlinger, Q He, J Johnston US Patent 10,287,628, 2019 | | 2019 |
| Transcriptome and cluster analysis of infant acute lymphoblastic leukemia cases with and without MLL (KMT2A) rearrangement B Yoo, MS Farooqi, R Kostadinov, N Miller, J Johnston, E Farrow, S Kelley, ... Cancer Research 77 (13_Supplement), 2416-2416, 2017 | | 2017 |
| Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation. SYJ Sun YuJia, NCY Nien ChungYi, CK Chen Kai, LHY Liu HsiaoYun, ... | | 2015 |
| ChIP-nexus protocol Q He, J Johnston, W Shao, J Zeitlinger | | |