| Cryptophyta as major bacterivores in freshwater summer plankton V Grujcic, JK Nuy, MM Salcher, T Shabarova, V Kasalicky, J Boenigk, ... The ISME journal 12 (7), 1668-1681, 2018 | 79 | 2018 |
| Factors shaping community patterns of protists and bacteria on a European scale C Bock, M Jensen, D Forster, S Marks, J Nuy, R Psenner, D Beisser, ... Environmental Microbiology 22 (6), 2243-2260, 2020 | 70 | 2020 |
| A genomic perspective across Earth’s microbiomes reveals that genome size in Archaea and Bacteria is linked to ecosystem type and trophic strategy A Rodríguez-Gijón, JK Nuy, M Mehrshad, M Buck, F Schulz, T Woyke, ... Frontiers in microbiology 12, 761869, 2022 | 64 | 2022 |
| Responses of stream microbes to multiple anthropogenic stressors in a mesocosm study JK Nuy, A Lange, AJ Beermann, M Jensen, V Elbrecht, O Röhl, D Peršoh, ... Science of The Total Environment 633, 1287-1301, 2018 | 30 | 2018 |
| Distinct sensitivity of fungal freshwater guilds to water quality O Röhl, D Peršoh, M Mittelbach, V Elbrecht, A Brachmann, J Nuy, ... Mycological Progress 16, 155-169, 2017 | 29 | 2017 |
| Ecological differentiation in two major freshwater bacterial taxa along environmental gradients JK Nuy, M Hoetzinger, MW Hahn, D Beisser, J Boenigk Frontiers in Microbiology 11, 154, 2020 | 28 | 2020 |
| A multi-omics study on quantifying antimicrobial resistance in European freshwater lakes S Spänig, L Eick, JK Nuy, D Beisser, M Ip, D Heider, J Boenigk Environment International 157, 106821, 2021 | 23 | 2021 |
| What determines the growth of individual castes in social trematodes? T Kamiya, K O’Dwyer, J Nuy, R Poulin Evolutionary Ecology 27, 1235-1247, 2013 | 10 | 2013 |
| Differential associations of five riverine organism groups with multiple stressors W Kaijser, AW Lorenz, VS Brauer, A Burfeid-Castellanos, GM David, ... Science of The Total Environment 934, 173105, 2024 | 7 | 2024 |
| A genomic perspective across earth’s microbiomes reveals that genome size in archaea and bacteria is linked to ecosystem type and trophic strategy. Front Microbiol 12: 761869 A Rodríguez-Gijón, JK Nuy, M Mehrshad, M Buck, F Schulz, T Woyke, ... | 7 | 2021 |
| A genomic perspective on genome size distribution across Earth’s microbiomes reveals a tendency to gene loss A Rodríguez-Gijón, JK Nuy, M Mehrshad, M Buck, F Schulz, T Woyke, ... bioRxiv 10 (2021.01), 18.427069, 2021 | 5 | 2021 |
| Geographic population structure and distinct intra-population dynamics of globally abundant freshwater bacteria M Hoetzinger, MW Hahn, LY Andersson, N Buckley, C Ramsin, M Buck, ... The ISME Journal 18 (1), wrae113, 2024 | 3 | 2024 |
| Taxonomic and functional diversity of aquatic heterotrophs is sustained by dissolved organic matter chemodiversity SL Garcia, JK Nuy, M Mehrshad, JJ Hampel, VT Sedano-Nuñez, M Buck, ... bioRxiv, 2022.03. 21.485019, 2022 | 3 | 2022 |
| Cryptophyta as major freshwater bacterivores in experiments with manipulated bacterial prey V Grujčić, J Nuy, MM Salcher ISME J 12, 1668-81, 2018 | 3 | 2018 |
| Genome‐resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes M Shah, TLV Bornemann, JK Nuy, MW Hahn, AJ Probst, D Beisser, ... Environmental Microbiology 26 (6), e16634, 2024 | 1 | 2024 |
| Earth's most needed uncultivated aquatic prokaryotes SA Simon, V Aschmann, A Behrendt, M Hügler, LM Engl, M Pohlner, ... Water Research, 122928, 2024 | | 2024 |
| Geographic population structure and distinct population dynamics of globally abundant freshwater bacteria M Hoetzinger, MW Hahn, LY Andersson, N Buckley, C Ramsin, M Buck, ... bioRxiv, 2023.07. 13.548520, 2023 | | 2023 |
| Identifying genome level variation in generalist and specialist bacteria and their relationship to abiotic conditions in European freshwater ecosystems M Shah, T Bornemann, J Nuy, A Probst, D Beisser, J Boenigk ARPHA Conference Abstracts 4, e64807, 2021 | | 2021 |
| Comparing Community Measures in Lake Microbial Ecology: Metagenomes and Metatranscriptomes and Amplicons, oh my! JK Nuy, T Bornemann, D Beisser, AJ Probst, J Boenigk | | 2020 |
| The effects of the environment on microbial communities investigated using high-throughput sequencing JK Nuy Dissertation, Duisburg, Essen, Universität Duisburg-Essen, 2020, 2020 | | 2020 |
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