| MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets YW Wu, BA Simmons, SW Singer Bioinformatics 32 (4), 605-607, 2016 | 1982 | 2016 |
| Critical Assessment of Metagenome Interpretation [mdash] a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 797 | 2017 |
| MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer Microbiome 2, 26, 2014 | 679 | 2014 |
| Diverse CRISPRs evolving in human microbiomes M Rho, YW Wu, H Tang, TG Doak, Y Ye PLoS genetics 8 (6), e1002441, 2012 | 240 | 2012 |
| A novel abundance-based algorithm for binning metagenomic sequences using l-tuples YW Wu, Y Ye Journal of Computational Biology 18 (3), 523-534, 2011 | 224 | 2011 |
| The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites SM Chaw, ACC Shih, D Wang, YW Wu, SM Liu Molecular Biology and Evolution 25 (3), 603-615, 2008 | 179 | 2008 |
| Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution SM Chaw, YC Liu, YW Wu, HY Wang, CYI Lin, CS Wu, HM Ke, LY Chang, ... Nature Plants 5 (1), 63, 2019 | 172 | 2019 |
| Association of Fecal and Plasma Levels of Short-Chain Fatty Acids With Gut Microbiota and Clinical Severity in Patients With Parkinson Disease SJ Chen, CC Chen, HY Liao, YT Lin, YW Wu, JM Liou, MS Wu, CH Kuo, ... Neurology 98 (8), e848-e858, 2022 | 152 | 2022 |
| Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA D Wang, YW Wu, ACC Shih, CS Wu, YN Wang, SM Chaw Molecular biology and evolution 24 (9), 2040-2048, 2007 | 129 | 2007 |
| A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains HL Her, YW Wu Bioinformatics 34 (13), i89-i95, 2018 | 107 | 2018 |
| Comparison of Multivariable Logistic Regression and Other Machine Learning Algorithms for Prognostic Prediction Studies in Pregnancy Care: Systematic Review and Meta-Analysis H Sufriyana, A Husnayain, YL Chen, CY Kuo, O Singh, TY Yeh, YW Wu, ... JMIR Medical Informatics 8 (11), e16503, 2020 | 92 | 2020 |
| Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage J Hiras, YW Wu, SA Eichorst, BA Simmons, SW Singer The ISME journal 10 (4), 833-845, 2016 | 74 | 2016 |
| Artificial intelligence-assisted prediction of preeclampsia: Development and external validation of a nationwide health insurance dataset of the BPJS Kesehatan in Indonesia H Sufriyana, YW Wu, ECY Su EBioMedicine 54, 102710, 2020 | 61 | 2020 |
| ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes YW Wu BMC Genomics 19 (1), 921, 2018 | 60 | 2018 |
| Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera SH Yang, K Tandon, CY Lu, N Wada, CJ Shih, SSY Hsiao, WN Jane, ... Microbiome 7 (1), 1-13, 2019 | 57 | 2019 |
| Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia WC Nelson, Y Maezato, YW Wu, MF Romine, SR Lindemann Applied and environmental microbiology 82 (1), 255-267, 2016 | 57 | 2016 |
| Discovery of enzymes for toluene synthesis from anoxic microbial communities HR Beller, AV Rodrigues, K Zargar, YW Wu, AK Saini, RM Saville, ... Nature chemical biology 14 (5), 451-457, 2018 | 49 | 2018 |
| Microbial community structure and functional potential along a hypersaline gradient JA Kimbrel, N Ballor, YW Wu, MM David, TC Hazen, BA Simmons, ... Frontiers in Microbiology 9, 1492, 2018 | 47 | 2018 |
| Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery WK Wu, S Panyod, PY Liu, CC Chen, HL Kao, HL Chuang, YH Chen, ... Microbiome 8 (1), 1-17, 2020 | 46 | 2020 |
| Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes A Kothari, YW Wu, JM Chandonia, M Charrier, L Rajeev, AM Rocha, ... mBio 10 (1), e02899-18, 2019 | 41 | 2019 |