| DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes J Pfab, NM Phan, D Si Proceedings of the National Academy of Sciences 118 (2), e2017525118, 2021 | 192 | 2021 |
| Deep learning to predict protein backbone structure from high-resolution cryo-EM density maps D Si, SA Moritz, J Pfab, J Hou, R Cao, L Wang, T Wu, J Cheng Scientific reports 10 (1), 4282, 2020 | 108 | 2020 |
| Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ... Nature methods 18 (2), 156-164, 2021 | 94 | 2021 |
| Outcomes of the 2019 emdataresource model challenge: validation of cryo-em models at near-atomic resolution CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ... BioRxiv, 2020.06. 12.147033, 2020 | 8 | 2020 |
| Deeptracer: Predicting backbone atomic structure from high resolution cryo-em density maps of protein complexes J Pfab, D Si BioRxiv, 2020.02. 12.946772, 2020 | 5 | 2020 |
| DeepTracer: Fast cryo-EM protein structure modeling and special studies on CoV-related complexes J Pfab, NM Phan, D Si bioRxiv, 2020.07. 21.214064, 2020 | 3 | 2020 |
| Automated threshold selection for cryo-EM density maps J Pfab, D Si Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019 | 3 | 2019 |
| Protein complex structure prediction from cryo-electron microscopy (cryo-em) density maps D Si, J Pfab, NM Phan US Patent App. 17/548,342, 2022 | 1 | 2022 |
| DeepTracer Web Service for Fast and Accurate De Novo Protein Complex Structure Prediction from Cryo-EM D Si, H Meng, J Pfab, Y Deng, Y Xie, J Tan, SHM Chow, J Chen, A Jain Algorithms and Methods in Structural Bioinformatics, 101-114, 2022 | 1 | 2022 |
| DeepTracer: Automated protein complex structure prediction from CoV-related Cryo-EM density maps J Pfab, NM Phan, D Si bioRxiv, 2020 | 1 | 2020 |
| Structure Prediction from Cryo-EM D Si, H Meng, J Pfab, Y Deng, Y Xie, J Tan, SHM Chow, J Chen, A Jain Algorithms and Methods in Structural Bioinformatics, 101, 2022 | | 2022 |
| Deciphering Protein Complex Structures from Cryo-electron Microscopy Maps using Deep Learning J Pfab University of Washington, 2020 | | 2020 |