João PGLM Rodrigues

Dikutip oleh

	Semua	Sejak 2020
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Alexandre M.J.J. BonvinUtrecht universityEmail yang diverifikasi di uu.nl
Panagiotis KastritisProfessor of Integrative Structural Biochemistry, MLU Halle / ERA Chair for cryo-EM, NHRF, AthensEmail yang diverifikasi di bct.uni-halle.de
Ezgi KaracaAssistant Professor, Izmir Biomedicine and Genome Center & DEUEmail yang diverifikasi di ibg.edu.tr
Mikael TrelletFluigentEmail yang diverifikasi di fluigent.com
Adrien MelquiondUniversity Medical Center Utrecht, NLEmail yang diverifikasi di umcutrecht.nl
Gydo Van ZundertSchrodingerEmail yang diverifikasi di schrodinger.com
Marc van DijkSenior scientist, Vrije Universiteit AmsterdamEmail yang diverifikasi di vu.nl
Sjoerd de VriesResearch Engineer, CMPLI, ParisEmail yang diverifikasi di inserm.fr
Li C XueRadboud University Medical CenterEmail yang diverifikasi di radboudumc.nl
Anna VangoneLarge Molecule Research - RocheEmail yang diverifikasi di uu.nl
Michael LevittStructural Biology, Stanford UniversityEmail yang diverifikasi di stanford.edu
João M. C. TeixeiraZymvol BiomodelingEmail yang diverifikasi di zymvol.com
Cunliang GengNetherlands eScience CenterEmail yang diverifikasi di esciencecenter.nl
Ron DrorStanford UniversityEmail yang diverifikasi di stanford.edu
Koen M VisscherVrije Universiteit AmsterdamEmail yang diverifikasi di vu.nl
Chris SanderHarvard Medical School, Broad Institute, MGH, Dana-Farber Cancer Institute, Memorial Sloan KetteringEmail yang diverifikasi di sanderlab.org
Zeynep KurkcuogluPhD Bogazici University, PostDoc Utrecht UniversityEmail yang diverifikasi di boun.edu.tr
Rolf BoelensUtrecht UniversityEmail yang diverifikasi di uu.nl
Markus WeingarthAssociate Professor for Biomedical NMR, Utrecht UniversityEmail yang diverifikasi di uu.nl
Siddarth NarasimhanScientist at WaveBreak TherapeuticsEmail yang diverifikasi di wavebreaktx.com

Ikuti

João PGLM Rodrigues

Principal Scientist, Schrodinger Inc

Email yang diverifikasi di schrodinger.com - Beranda

Computational Biology Structural Biology Biophysics


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016	2741	2016
PRODIGY: a web server for predicting the binding affinity of protein–protein complexes LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone Bioinformatics 32 (23), 3676-3678, 2016	1132	2016
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014	558	2014
Structural insights into binding specificity, efficacy and bias of a β₂AR partial agonist M Masureel, Y Zou, LP Picard, E van der Westhuizen, JP Mahoney, ... Nature chemical biology 14 (11), 1059-1066, 2018	197	2018
KoBaMIN: a knowledge-based minimization web server for protein structure refinement JP Rodrigues, M Levitt, G Chopra Nucleic acids research 40 (W1), W323-W328, 2012	172	2012
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016	169	2016
Structural and functional analysis of a β2-adrenergic receptor complex with GRK5 KE Komolov, Y Du, NM Duc, RM Betz, JP Rodrigues, RD Leib, D Patra, ... Cell 169 (3), 407-421. e16, 2017	164	2017
Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface PL Kastritis, JP Rodrigues, GE Folkers, R Boelens, AMJJ Bonvin Journal of molecular biology 426 (14), 2632-2652, 2014	138	2014
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ... Journal of computer-aided molecular design 32, 175-185, 2018	132	2018
Integrative computational modeling of protein interactions JP Rodrigues, AMJJ Bonvin The FEBS journal 281 (8), 1988-2003, 2014	129	2014
Clustering biomolecular complexes by residue contacts similarity JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ... Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012	127	2012
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013	114	2013
OpenMM 8: molecular dynamics simulation with machine learning potentials P Eastman, R Galvelis, RP Peláez, CRA Abreu, SE Farr, E Gallicchio, ... The Journal of Physical Chemistry B 128 (1), 109-116, 2023	106	2023
Predicting the zoonotic capacity of mammals to transmit SARS-CoV-2 IR Fischhoff, AA Castellanos, JP Rodrigues, A Varsani, BA Han Proceedings of the Royal Society B 288 (1963), 20211651, 2021	106	2021
pdb-tools: A swiss army knife for molecular structures JP Rodrigues, JMC Teixeira, M Trellet, AMJJ Bonvin F1000Research 7, 1961, 2018	103	2018
The supramolecular organization of a peptide-based nanocarrier at high molecular detail M Rad-Malekshahi, KM Visscher, JP Rodrigues, R De Vries, WE Hennink, ... Journal of the American Chemical Society 137 (24), 7775-7784, 2015	79	2015
Defining the limits of homology modeling in information‐driven protein docking J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ... Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013	78	2013
The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature protocols 19 (11), 3219-3241, 2024	71	2024
Insights on cross-species transmission of SARS-CoV-2 from structural modeling JP Rodrigues, S Barrera-Vilarmau, J Mc Teixeira, M Sorokina, E Seckel, ... PLoS computational biology 16 (12), e1008449, 2020	68	2020
Concept-based query expansion for retrieving gene related publications from MEDLINE S Matos, JP Arrais, J Maia-Rodrigues, JL Oliveira BMC bioinformatics 11, 1-9, 2010	64	2010

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