Jonas Paulsen

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Eivind HovigProfessor.1. Centre for bioinformatics. Dept. of Informatics, Univ of Oslo. 2. Oslo Univ. Hosp.Email yang diverifikasi di ifi.uio.no
Geir Kjetil SandveProfessor, bioinformatics, University of OsloEmail yang diverifikasi di ifi.uio.no
Lars HoldenMan. dir. Norsk RegnesentralEmail yang diverifikasi di nr.no
Marit HoldenChief research scientist, Norsk Regnesentral Email yang diverifikasi di nr.no
Thomas HamelryckProfessor in Machine Learning, BIO/DIKU, University of CopenhagenEmail yang diverifikasi di bio.ku.dk
Trevor ClancyCo-founder at NEC OncoImmunity. Professor at Nagasaki UniversityEmail yang diverifikasi di oncoimmunity.com
Ola MyklebostProfessor Cancer Biology, University of BergenEmail yang diverifikasi di uib.no
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenEmail yang diverifikasi di di.ku.dk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayEmail yang diverifikasi di uni.no
Snæbjörn PálssonProfessor in population biology, University of IcelandEmail yang diverifikasi di hi.is
Einar ÁrnasonProfessor Evolutionary Biology, University of IcelandEmail yang diverifikasi di hi.is
Matúš KalašSenior Engineer / Infrastructure Scientist, Department of Informatics, University of BergenEmail yang diverifikasi di uib.no
Ståle NygårdCancer Registry of NorwayEmail yang diverifikasi di kreftregisteret.no
Egil FerkingstaddeCODE geneticsEmail yang diverifikasi di decode.is
Thomas KällmanKarolinska institutetEmail yang diverifikasi di ki.se
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDEmail yang diverifikasi di leeds.ac.uk
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Jonas Paulsen

Associate Professor, University of Oslo, Norway

Email yang diverifikasi di ifi.uio.no - Beranda

3D genome epigenetics bioinformatics


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
The genome sequence of Atlantic cod reveals a unique immune system B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ... Nature 477 (7363), 207-210, 2011	874	2011
Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts J Paulsen, M Sekelja, AR Oldenburg, A Barateau, N Briand, E Delbarre, ... Genome biology 18, 1-15, 2017	203	2017
Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation J Paulsen, TM Liyakat Ali, M Nekrasov, E Delbarre, MO Baudement, ... Nature genetics 51 (5), 835-843, 2019	126	2019
The regulatory landscape of osteogenic differentiation AM Håkelien, JC Bryne, KG Harstad, S Lorenz, J Paulsen, J Sun, ... Stem Cells 32 (10), 2780-2793, 2014	107	2014
Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis PE García‐Nieto, EK Schwartz, DA King, J Paulsen, P Collas, RE Herrera, ... The EMBO journal 36 (19), 2829-2843, 2017	102	2017
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	100	2010
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization M Di Stefano, J Paulsen, TG Lien, E Hovig, C Micheletti Scientific reports 6 (1), 35985, 2016	79	2016
Computational 3D genome modeling using Chrom3D J Paulsen, TM Liyakat Ali, P Collas Nature protocols 13 (5), 1137-1152, 2018	59	2018
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions J Paulsen, EA Rødland, L Holden, M Holden, E Hovig Nucleic acids research 42 (18), e143-e143, 2014	58	2014
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization J Paulsen, GK Sandve, S Gundersen, TG Lien, K Trengereid, E Hovig Bioinformatics 30 (11), 1620-1622, 2014	50	2014
The lipodystrophic hotspot lamin A p. R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks N Briand, AC Guénantin, D Jeziorowska, A Shah, M Mantecon, E Capel, ... Human molecular genetics 27 (8), 1447-1459, 2018	49*	2018
Manifold based optimization for single-cell 3D genome reconstruction J Paulsen, O Gramstad, P Collas PLoS computational biology 11 (8), e1004396, 2015	49	2015
The Genomic HyperBrowser: an analysis web server for genome-scale data GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ... Nucleic acids research 41 (W1), W133-W141, 2013	48	2013
4D nucleome modeling M Di Stefano, J Paulsen, D Jost, MA Marti-Renom Current opinion in genetics & development 67, 25-32, 2021	44	2021
An assessment of mitochondrial variation in Arctic gadoids S Pálsson, T Källman, J Paulsen, E Árnason Polar biology 32, 471-479, 2009	35	2009
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements J Paulsen, TG Lien, GK Sandve, L Holden, Ø Borgan, IK Glad, E Hovig Nucleic acids research 41 (10), 5164-5174, 2013	32	2013
4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation? M Sekelja, J Paulsen, P Collas Genome biology 17, 1-10, 2016	27	2016
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes LM Nordstrand, K Furu, J Paulsen, T Rognes, A Klungland Nucleic Acids Research, 2012	14	2012
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions R Rossini, V Kumar, A Mathelier, T Rognes, J Paulsen Genome Biology 23 (1), 247, 2022	12	2022
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data A Raffo, J Paulsen Briefings in Bioinformatics 24 (5), bbad302, 2023	11	2023

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