Zeynep Kurkcuoglu

Dikutip oleh

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Pemra DorukerUniversity of Pittsburgh, Bogazici UniversityEmail yang diverifikasi di pitt.edu
Alexandre M.J.J. BonvinUtrecht universityEmail yang diverifikasi di uu.nl
Mikael TrelletFluigentEmail yang diverifikasi di fluigent.com
Adrien MelquiondUniversity Medical Center Utrecht, NLEmail yang diverifikasi di umcutrecht.nl
Anna VangoneLarge Molecule Research - RocheEmail yang diverifikasi di uu.nl
Li C XueRadboud University Medical CenterEmail yang diverifikasi di radboudumc.nl
Irina S. MoreiraUniversity of Coimbra, Life Sciences Department; Center for Neuroscience and Cell BiologyEmail yang diverifikasi di cnc.uc.pt
Gydo Van ZundertSchrodingerEmail yang diverifikasi di schrodinger.com
João PGLM RodriguesPrincipal Scientist, Schrodinger IncEmail yang diverifikasi di schrodinger.com
Ivet BaharDirector, Laufer Center for Physical & Quantitative Biology, Stony Brook UniversityEmail yang diverifikasi di pitt.edu
Ozge KurkcuogluAssociate Professor of Chemical Engineering, Istanbul Technical UniversityEmail yang diverifikasi di itu.edu.tr
Mehdi NellenEmail yang diverifikasi di students.uu.nl
Marc van DijkSenior scientist, Vrije Universiteit AmsterdamEmail yang diverifikasi di vu.nl
Siddarth NarasimhanScientist at WaveBreak TherapeuticsEmail yang diverifikasi di wavebreaktx.com
E. Demet Akten AkdoganDepartment of Molecular Biology and Genetics, Kadir Has UniversityEmail yang diverifikasi di khas.edu.tr
Panagiotis KastritisProfessor of Integrative Structural Biochemistry, MLU Halle / ERA Chair for cryo-EM, NHRF, AthensEmail yang diverifikasi di bct.uni-halle.de
Ezgi KaracaAssistant Professor, Izmir Biomedicine and Genome Center & DEUEmail yang diverifikasi di ibg.edu.tr
Koen M VisscherVrije Universiteit AmsterdamEmail yang diverifikasi di vu.nl
Antonio RosatoAssociate Professor of Chemistry, University of FlorenceEmail yang diverifikasi di unifi.it
Marco Verlato, Ph.D.Istituto Nazionale di Fisica NucleareEmail yang diverifikasi di pd.infn.it

Ikuti

Zeynep Kurkcuoglu

PhD Bogazici University, PostDoc Utrecht University

Email yang diverifikasi di boun.edu.tr - Beranda

Computational Structural Biology biomolecule flexibility and dynamics modeling


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ... Journal of computer-aided molecular design 32, 175-185, 2018	132	2018
INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... Journal of Grid Computing 16, 381-408, 2018	72	2018
Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1 A Vangone, JPGLM Rodrigues, LC Xue, GCP van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics, 2016	63	2016
The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes GCP van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ... Journal of Molecular Biology 429 (3), 399–407, 2017	61	2017
ClustENM: ENM-based sampling of essential conformational space at full atomic resolution Z Kurkcuoglu, I Bahar, P Doruker Journal of chemical theory and computation 12 (9), 4549-4562, 2016	58	2016
Coupling between Catalytic Loop Motions and Enzyme Global Dynamics Z Kurkcuoglu, A Bakan, D Kocaman, I Bahar, P Doruker PLOS Computational Biology 8 (9), e1002705, 2012	58	2012
Collective dynamics of the ribosomal tunnel revealed by elastic network modeling O Kurkcuoglu, Z Kurkcuoglu, P Doruker, RL Jernigan Proteins: Structure, Function, and Bioinformatics 75 (4), 837-845, 2009	52	2009
Pre‐and post‐docking sampling of conformational changes using ClustENM and HADDOCK for protein‐protein and protein‐DNA systems Z Kurkcuoglu, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 88 (2), 292-306, 2020	37	2020
How an inhibitor bound to subunit interface alters triosephosphate isomerase dynamics Z Kurkcuoglu, D Findik, ED Akten, P Doruker Biophysical Journal 109 (6), 1169-1178, 2015	29	2015
Ligand docking to intermediate and close-to-bound conformers generated by an elastic network model based algorithm for highly flexible proteins Z Kurkcuoglu, P Doruker PloS one 11 (6), e0158063, 2016	28	2016
Understanding the binding specificity of G-protein coupled receptors toward G-proteins and arrestins: application to the dopamine receptor family AJ Preto, CAV Barreto, SJ Baptista, JG Almeida, A Lemos, A Melo, ... Journal of Chemical Information and Modeling 60 (8), 3969-3984, 2020	17	2020
An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45 PI Koukos, J Roel‐Touris, F Ambrosetti, C Geng, J Schaarschmidt, ... Proteins: Structure, Function, and Bioinformatics 88 (8), 1029-1036, 2020	16	2020
Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and Human Z Kurkcuoglu, G Ural, E Demet Akten, P Doruker Molecular Informatics 30 (11‐12), 986-995, 2011	14	2011
Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states MT Can, Z Kurkcuoglu, G Ezeroglu, A Uyar, O Kurkcuoglu, P Doruker PLoS One 12 (4), e0176262, 2017	8	2017
Sense and simplicity in HADDOCK scoring: lessons from CASP‐CAPRI (page 418) A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (8), 1589-1590, 2017	5	2017
Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase Z Kurkcuoglu, P Doruker Entropy 15 (3), 1085-1099, 2013	4	2013
Functional Dynamics of Proteins Elucidated by Statistical Analysis of Simulation Data B Alakent, Z Kurkcuoglu, P Doruker Current Physical Chemistry 2 (4), 443-451, 2012	1	2012
Real‐World Evidence BRIDGE: A Tool to Connect Protocol With Code Programming AC Royo, R Elbers JHJ, D Weibel, V Hoxhaj, Z Kurkcuoglu, ... Pharmacoepidemiology and Drug Safety 33 (12), e70062, 2024		2024
Real-World Evidence BRIDGE: a tool to connect protocol with code programming R Elbers, D Weibel, V Hoxhaj, Z Kurkcuoglu, M Sturkenboom, TA Vaz		2024
Real-World Evidence BRIDGE: a tool to connect protocol with code programming A Cid Royo, R Elbers, D Weibel, V Hoxhaj, Z Kurkcuoglu, M Sturkenboom, ... medRxiv, 2024.05. 08.24306833, 2024		2024

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