Siddharth Dey

Dikutip oleh

	Semua	Sejak 2020
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Alex ChialastriPostdoctoral Scholar, University of California Santa BarbaraEmail yang diverifikasi di ucsb.edu
Alexander van OudenaardenHubrecht InstituteEmail yang diverifikasi di hubrecht.eu
David SchafferProfessor of Chemical and Biomolecular Engineering, Bioengineering, and Neuroscience, UC BerkeleyEmail yang diverifikasi di berkeley.edu
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OEmail yang diverifikasi di lbl.gov
Bastiaan SpanjaardPostdoctoral researcher, BIMSB, MDC BerlinEmail yang diverifikasi di mdc-berlin.de
Lennart KesterPrincess Maxima Center for pediatric oncologyEmail yang diverifikasi di prinsesmaximacentrum.nl
Bas van SteenselNetherlands Cancer InstituteEmail yang diverifikasi di nki.nl
Kathryn Miller-JensenProfessor of Biomedical Engineering, Yale UniversityEmail yang diverifikasi di yale.edu
Chatarin WangsanuwatMahidol UniversityEmail yang diverifikasi di mahidol.edu
Prajit LimsirichaiIGNITE ImmunotherapyEmail yang diverifikasi di berkeley.edu
Maxwell Z WilsonUniversity of California Santa BarbaraEmail yang diverifikasi di ucsb.edu
AMANDER CLARKProfessor of Molecular Cell and Developmental Biology, UCLAEmail yang diverifikasi di g.ucla.edu
Kenneth S. Kosik UC Santa BarbaraEmail yang diverifikasi di lifesci.ucsb.edu
Jiwon JangPohang University of Science and Technology (POSTECH)Email yang diverifikasi di postech.ac.kr
marcin p. joachimiakComputational Biologist, Lawrence Berkeley National LaboratoryEmail yang diverifikasi di lbl.gov
John C. BurnettAssociate Professor at University of Miami and Sylvester Comprehensive Cancer CenterEmail yang diverifikasi di miami.edu
Robert PiscopioUniversity of California Santa BarbaraEmail yang diverifikasi di ucsb.edu
Nicolas RivronInstitute of Molecular Biotechnology, Austrian academy of science.Email yang diverifikasi di imba.oeaw.ac.at
Sebastian StreichanProfessor of Physics and Quantitative Biology, University of California Santa BarbaraEmail yang diverifikasi di ucsb.edu

Ikuti

Siddharth Dey

Associate Professor, University of California, Santa Barbara

Email yang diverifikasi di ucsb.edu - Beranda

Systems biology single-cell genomics epigenetics stem cell biology


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
Integrated genome and transcriptome sequencing of the same cell SS Dey, L Kester, B Spanjaard, M Bienko, A van Oudenaarden Nature Biotechnology 33, 285-289, 2015	560	2015
Genome-wide maps of nuclear lamina interactions in single human cells J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ... Cell 163 (1), 134-147, 2015	511	2015
Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction D Mooijman, SS Dey, JC Boisset, N Crosetto, A Van Oudenaarden Nature biotechnology 34 (8), 852-856, 2016	167	2016
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci SS Dey, JE Foley, P Limsirichai, DV Schaffer, AP Arkin Molecular systems biology 11 (5), 806, 2015	119	2015
Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells K Rooijers, CM Markodimitraki, FJ Rang, SS de Vries, A Chialastri, ... Nature biotechnology 37, 766–772, 2019	115	2019
Varying virulence: epigenetic control of expression noise and disease processes K Miller-Jensen, SS Dey, DV Schaffer, AP Arkin Trends in biotechnology 29 (10), 517-525, 2011	72	2011
An extended culture system that supports human primordial germ cell-like cell survival and initiation of DNA methylation erasure JJ Gell, W Liu, E Sosa, A Chialastri, G Hancock, Y Tao, SE Wamaitha, ... Stem Cell Reports 14 (3), 433-446, 2020	42	2020
Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression K Miller-Jensen, SS Dey, N Pham, JE Foley, AP Arkin, DV Schaffer Integrative Biology 4 (6), 661-671, 2012	37	2012
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion C Wangsanuwat, KA Heom, E Liu, MA O’Malley, SS Dey BMC genomics 21, 1-12, 2020	30	2020
Simultaneous quantification of protein–DNA interactions and transcriptomes in single cells with scDam&T-seq CM Markodimitraki, FJ Rang, K Rooijers, SS de Vries, A Chialastri, ... Nature protocols 15 (6), 1922-1953, 2020	29	2020
Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development M Sen, D Mooijman, A Chialastri, JC Boisset, M Popovic, B Heindryckx, ... Nature Communications 12 (1), 1286, 2021	25	2021
Control over single-cell distribution of G1 lengths by WNT governs pluripotency J Jang, D Han, M Golkaram, M Audouard, G Liu, D Bridges, S Hellander, ... Plos Biology 17 (9), e3000453, 2019	18	2019
Quantitative evaluation and optimization of co-drugging to improve anti-HIV latency therapy VC Wong, LE Fong, NM Adams, Q Xue, SS Dey, K Miller-Jensen Cellular and molecular bioengineering 7, 320-333, 2014	13	2014
Optogenetic control of the integrated stress response reveals proportional encoding and the stress memory landscape T Batjargal, F Zappa, RJ Grant, RA Piscopio, A Chialastri, SS Dey, ... Cell Systems 14 (7), 551-562. e5, 2023	12	2023
Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression SS Dey, Y Xue, MP Joachimiak, GD Friedland, JC Burnett, Q Zhou, ... Journal of Biological Chemistry 287 (11), 7945-7955, 2012	12	2012
A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing C Wangsanuwat, A Chialastri, JF Aldeguer, NC Rivron, SS Dey Cell reports methods 1 (4), 2021	9	2021
Opportunities for chemical engineering thermodynamics in biotechnology: some examples SS Dey, JM Prausnitz Industrial & Engineering Chemistry Research 50 (1), 3-15, 2011	6	2011
Prior Fc receptor activation primes macrophages for increased sensitivity to IgG via long-term and short-term mechanisms A Bond, S Fiaz, K Rollins, JEQ Nario, ET Snyder, DJ Atkins, SJ Rosen, ... Developmental Cell 59 (21), 2882-2896. e7, 2024	5	2024
(1S, 2S, 4S, 5S)-Cyclohexane-1, 2, 4, 5-tetrol monohydrate G Mehta, S Sen, S Dey Crystal Structure Communications 61 (6), o358-o360, 2005	5	2005
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity A Chialastri, S Sarkar, EE Schauer, S Lamba, SS Dey Nature Structural & Molecular Biology 31 (8), 1296-1308, 2024	4	2024

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