| A mechanistic model and therapeutic interventions for COVID-19 involving a RAS-mediated bradykinin storm MR Garvin, C Alvarez, JI Miller, ET Prates, AM Walker, BK Amos, AE Mast, ... elife 9, e59177, 2020 | 454 | 2020 |
| A high-performance computing implementation of iterative random forest for the creation of predictive expression networks A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson Genes 10 (12), 996, 2019 | 44 | 2019 |
| Identification of novel, replicable genetic risk loci for suicidal thoughts and behaviors among US military veterans NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ... JAMA psychiatry 80 (2), 135-145, 2023 | 28 | 2023 |
| Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data AM Walker, A Cliff, J Romero, MB Shah, P Jones, JGFM Gazolla, ... Computational and Structural Biotechnology Journal 20, 3372-3386, 2022 | 26 | 2022 |
| Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence A Furches, D Kainer, D Weighill, A Large, P Jones, AM Walker, J Romero, ... Frontiers in Plant Science 10, 1249, 2019 | 19 | 2019 |
| Reusability first: Toward FAIR workflows M Wolf, J Logan, K Mehta, D Jacobson, M Cashman, AM Walker, ... 2021 IEEE International Conference on Cluster Computing (CLUSTER), 444-455, 2021 | 17 | 2021 |
| Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering JM Noshay, T Walker, WG Alexander, DM Klingeman, J Romero, ... Nucleic acids research 51 (19), 10147-10161, 2023 | 11 | 2023 |
| Running ensemble workflows at extreme scale: Lessons learned and path forward K Mehta, A Cliff, F Suter, AM Walker, M Wolf, D Jacobson, S Klasky 2022 IEEE 18th International Conference on e-Science (e-Science), 284-294, 2022 | 5 | 2022 |
| Digging deeper into GWAS signal using GRIN implicates additional genes contributing to suicidal behavior KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ... medRxiv, 2022.04. 20.22273895, 2022 | 4 | 2022 |
| RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species D Kainer, M Lane, KA Sullivan, JI Miller, M Cashman, M Morgan, A Cliff, ... bioRxiv, 2024.07. 17.603975, 2024 | 3 | 2024 |
| Using iterative random forest to find geospatial environmental and Sociodemographic predictors of suicide attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... Frontiers in psychiatry 14, 1178633, 2023 | 3 | 2023 |
| Analyses of GWAS signal using GRIN identify additional genes contributing to suicidal behavior KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ... Communications Biology 7 (1), 1360, 2024 | 1 | 2024 |
| Using explainable-AI to find geospatial environmental and sociodemographic predictors of suicide attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... medRxiv, 2022.04. 26.22274333, 2022 | 1 | 2022 |
| Estimating geographic variation of infection fatality ratios during epidemics J Ladau, EL Brodie, N Falco, I Bansal, EB Hoffman, MP Joachimiak, ... Infectious Disease Modelling 9 (2), 634-643, 2024 | | 2024 |
| Identifying Biological Pathways Underlying Switchgrass Bioenergy Traits Using Arabidopsis thaliana Exascale/Petascale Complexity Networks Deployed in KBase K Sullivan, MJ Lane, D Kainer, DD Blair, HB Chhetri, YQ Wang, M Morgan, ... Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024 | | 2024 |
| Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach ET Prates, MR Garvin, P Jones, JI Miller, KA Sullivan, A Cliff, ... SARS-CoV-2: Methods and Protocols, 317-351, 2022 | | 2022 |
| Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach E Teixeira Prates, M Garvin, PC Jones, J Miller, K Sullivan, A Cliff, ... Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States), 2022 | | 2022 |
| Iterative Random Forest Based High Performance Computing Methods Applied to Biological Systems and Human Health AM Walker | | 2022 |
| The impact of environmental mycobiomes on geographic variation in COVID-19 mortality J Ladau, K Abuabara, AM Walker, MP Joachimiak, I Bansal, Y Wu, ... medRxiv, 2021.12. 14.21267549, 2021 | | 2021 |
| Estimating area-level variation in SARS-CoV-2 infection fatality ratios J Ladau, C Kuo, EL Brodie, N Falco, I Bansal, EB Hoffman, ... medRxiv, 2021.12. 04.21267288, 2021 | | 2021 |
