| The vaginal microbiome and preterm birth JM Fettweis, MG Serrano, JP Brooks, DJ Edwards, PH Girerd, HI Parikh, ... Nature medicine 25 (6), 1012-1021, 2019 | 833 | 2019 |
| Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications G Wu, Q Yan, JA Jones, YJ Tang, SS Fong, MAG Koffas Trends in biotechnology 34 (8), 652-664, 2016 | 613 | 2016 |
| In silico design and adaptive evolution of Escherichia coli for production of lactic acid SS Fong, AP Burgard, CD Herring, EM Knight, FR Blattner, CD Maranas, ... Biotechnology and bioengineering 91 (5), 643-648, 2005 | 492 | 2005 |
| Systems approach to refining genome annotation JL Reed, TR Patel, KH Chen, AR Joyce, MK Applebee, CD Herring, ... Proceedings of the National Academy of Sciences 103 (46), 17480-17484, 2006 | 385 | 2006 |
| Metabolic gene–deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes SS Fong, BØ Palsson Nature genetics 36 (10), 1056-1058, 2004 | 382 | 2004 |
| Comparison of chondrogensis in static and perfused bioreactor culture D Pazzano, KA Mercier, JM Moran, SS Fong, DD DiBiasio, JX Rulfs, ... Biotechnology progress 16 (5), 893-896, 2000 | 371 | 2000 |
| Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states SS Fong, AR Joyce, BØ Palsson Genome research 15 (10), 1365-1372, 2005 | 348 | 2005 |
| Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy MG Serrano, HI Parikh, JP Brooks, DJ Edwards, TJ Arodz, L Edupuganti, ... Nature medicine 25 (6), 1001-1011, 2019 | 296 | 2019 |
| Engineering microbial consortia by division of labor GW Roell, J Zha, RR Carr, MA Koffas, SS Fong, YJ Tang Microbial cell factories 18, 1-11, 2019 | 243 | 2019 |
| Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes SS Fong, A Nanchen, BO Palsson, U Sauer Journal of Biological Chemistry 281 (12), 8024-8033, 2006 | 234 | 2006 |
| Identification of genome-scale metabolic network models using experimentally measured flux profiles MJ Herrgård, SS Fong, BØ Palsson PLoS computational biology 2 (7), e72, 2006 | 162 | 2006 |
| Description and Interpretation of Adaptive Evolution of Escherichia coli K-12 MG1655 by Using a Genome-Scale In Silico Metabolic Model SS Fong, JY Marciniak, BØ Palsson Journal of bacteriology 185 (21), 6400-6408, 2003 | 156 | 2003 |
| Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production SB Roberts, CM Gowen, JP Brooks, SS Fong BMC systems biology 4, 1-17, 2010 | 153 | 2010 |
| Challenges and Advances for Genetic Engineering of Non-model Bacteria and Uses in Consolidated Bioprocessing Q Yan, SS Fong FRONTIERS IN MICROBIOLOGY 8, 2017 | 102 | 2017 |
| Lignin biodegradation and industrial implications AB Fisher, SS Fong AIMS Bioengineering 1 (2), 92-112, 2014 | 100 | 2014 |
| Metabolic engineering of Thermobifida fusca for direct aerobic bioconversion of untreated lignocellulosic biomass to 1-propanol Y Deng, SS Fong Metabolic engineering 13 (5), 570-577, 2011 | 97 | 2011 |
| Metabolic analysis of adaptive evolution for in silico‐designed lactate‐producing strains Q Hua, AR Joyce, SS Fong, BØ Palsson Biotechnology and bioengineering 95 (5), 992-1002, 2006 | 82 | 2006 |
| Metabolic Characterization of Escherichia coli Strains Adapted to Growth on Lactate Q Hua, AR Joyce, BØ Palsson, SS Fong Applied and environmental microbiology 73 (14), 4639-4647, 2007 | 80 | 2007 |
| Bacterial chitinase: nature and perspectives for sustainable bioproduction Q Yan, SS Fong Bioresources and Bioprocessing 2, 1-9, 2015 | 74 | 2015 |
| Recent advances on constraint-based models by integrating machine learning P Rana, C Berry, P Ghosh, SS Fong Current Opinion in Biotechnology 64, 85-91, 2020 | 67 | 2020 |
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