| Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies CP Lin, JP Huang, CS Wu, CY Hsu, SM Chaw Genome biology and evolution 2, 504-517, 2010 | 194 | 2010 |
| A revised classification of orders and families in the two major subclasses of Lecanoromycetes (Ascomycota) based on a temporal approach E Kraichak, JP Huang, M Nelsen, SD Leavitt, HT Lumbsch Botanical Journal of the Linnean Society 188 (3), 233-249, 2018 | 97 | 2018 |
| The species versus subspecies conundrum: quantitative delimitation from integrating multiple data types within a single Bayesian approach in Hercules beetles JP Huang, LL Knowles Systematic Biology 65 (4), 685-699, 2016 | 96 | 2016 |
| Function of being colorful in web spiders: attracting prey or camouflaging oneself? IM Tso, CP Liao, RP Huang, EC Yang Behavioral Ecology 17 (4), 606-613, 2006 | 68 | 2006 |
| The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota CP Lin, MY Chen, JP Huang Gene 468 (1-2), 20-29, 2010 | 53 | 2010 |
| Is population subdivision different from speciation? From phylogeography to species delimitation JP Huang Ecology and Evolution 10 (14), 6890-6896, 2020 | 51 | 2020 |
| Different species or genetically divergent populations? Integrative species delimitation of the Primulina hochiensis complex from isolated karst habitats L Yang, H Kong, JP Huang, M Kang Molecular Phylogenetics and Evolution 132, 219-231, 2019 | 49 | 2019 |
| Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota) TJ Widhelm, F Grewe, JP Huang, JA Mercado-Díaz, B Goffinet, R Lücking, ... Scientific Reports 9 (1), 8968, 2019 | 48 | 2019 |
| Microevolutionary processes impact macroevolutionary patterns J Li, JP Huang, J Sukumaran, LL Knowles BMC evolutionary biology 18, 1-8, 2018 | 45 | 2018 |
| Evolution of the latitudinal diversity gradient in the hyperdiverse ant genus Pheidole EP Economo, JP Huang, G Fischer, EM Sarnat, N Narula, M Janda, ... Global Ecology and Biogeography 28 (4), 456-470, 2019 | 44 | 2019 |
| Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA SDLHTL Felix Grewe, Jen-Pen Huang Scientific Reports 7, 9884, 2017 | 43 | 2017 |
| Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages TJ Lee, YC Liu, WA Liu, YF Lin, HH Lee, HM Ke, JP Huang, MYJ Lu, ... Genome Research 32 (5), 864-877, 2022 | 42 | 2022 |
| Diversification in subtropical mountains: Phylogeography, Pleistocene demographic expansion, and evolution of polyphenic mandibles in Taiwanese stag beetle, Lucanus formosanus JP Huang, CP Lin Molecular Phylogenetics and Evolution 57 (3), 1149-1161, 2010 | 41 | 2010 |
| Nocturnal hunting of a brightly coloured sit-and-wait predator IM Tso, JP Huang, CP Liao Animal Behaviour 74 (4), 787-793, 2007 | 39 | 2007 |
| Genome-scale data reveal the role of hybridization in lichen-forming fungi R Keuler, A Garretson, T Saunders, RJ Erickson, N St. Andre, F Grewe, ... Scientific Reports 10 (1), 1497, 2020 | 38 | 2020 |
| Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta … JP Huang, JVG Hill, J Ortego, LL Knowles Systematic Entomology 45 (3), 594-605, 2020 | 36 | 2020 |
| Lineage-specific late pleistocene expansion of an endemic subtropical gossamer-wing damselfly, Euphaea formosa, in Taiwan JP Huang, CP Lin BMC evolutionary biology 11, 1-13, 2011 | 35 | 2011 |
| Assessing phylogeny and historical biogeography of the largest genus of lichen-forming fungi, Xanthoparmelia (Parmeliaceae, Ascomycota) SD Leavitt, PM Kirika, GA De Paz, JP Huang, HUR Jae-Seoun, F GREWE, ... The Lichenologist 50 (3), 299-312, 2018 | 33 | 2018 |
| Phylogeny of Calocedrus (Cupressaceae), an eastern Asian and western North American disjunct gymnosperm genus, inferred from nuclear ribosomal nrITS sequences CH Chen, JP Huang, CC Tsai, SM Chaw Botanical Studies 50 (4), 425-433, 2009 | 31 | 2009 |
| Oligocene origin and drivers of diversification in the genus Sticta (Lobariaceae, Ascomycota) TJ Widhelm, FR Bertoletti, MJ Asztalos, JA Mercado-Diaz, JP Huang, ... Molecular Phylogenetics and Evolution 126, 58-73, 2018 | 29 | 2018 |