Követés
James B. Brown
James B. Brown
Lawrence Berkeley National Laboratory; UC Berkeley; Arva Intelligence, Inc.
E-mail megerősítve itt: lbl.gov - Kezdőlap
Cím
Hivatkozott rá
Hivatkozott rá
Év
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
171862012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60992007
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
54752012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
23132012
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
17122011
Measuring reproducibility of high-throughput experiments
Q Li, JB Brown, H Huang, PJ Bickel
11812011
Diversity and dynamics of the Drosophila transcriptome
JB Brown, N Boley, R Eisman, GE May, MH Stoiber, MO Duff, BW Booth, ...
Nature 512 (7515), 393-399, 2014
7682014
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6802011
Long noncoding RNAs are rarely translated in two human cell lines
B Bánfai, H Jia, J Khatun, E Wood, B Risk, WE Gundling, A Kundaje, ...
Genome research 22 (9), 1646-1657, 2012
4652012
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic …
S MacArthur, XY Li, J Li, JB Brown, HC Chu, L Zeng, BP Grondona, ...
Genome biology 10, 1-26, 2009
3982009
Iterative random forests to discover predictive and stable high-order interactions
S Basu, K Kumbier, JB Brown, B Yu
Proceedings of the National Academy of Sciences 115 (8), 1943-1948, 2018
3552018
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
3392014
Modeling gene expression using chromatin features in various cellular contexts
X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ...
Genome biology 13, 1-17, 2012
3282012
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13, 1-22, 2012
3092012
De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing
M Stoiber, J Quick, R Egan, J Eun Lee, S Celniker, RK Neely, N Loman, ...
BioRxiv, 094672, 2016
2902016
Genome-wide analysis of promoter architecture in Drosophila melanogaster
RA Hoskins, JM Landolin, JB Brown, JE Sandler, H Takahashi, ...
Genome research 21 (2), 182-192, 2011
2872011
Global patterns of tissue-specific alternative polyadenylation in Drosophila
P Smibert, P Miura, JO Westholm, S Shenker, G May, MO Duff, D Zhang, ...
Cell reports 1 (3), 277-289, 2012
2672012
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2522007
Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility
J Wessel, AY Chu, SM Willems, S Wang, H Yaghootkar, JA Brody, ...
Nature communications 6 (1), 5897, 2015
2362015
Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
JJ Li, CR Jiang, JB Brown, H Huang, PJ Bickel
Proceedings of the National Academy of Sciences 108 (50), 19867-19872, 2011
1962011
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Cikkek 1–20