Zhi John Lu

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Yucheng T. YangAssociate Professor, Fudan UniversityAdresse e-mail validée de fudan.edu.cn
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityAdresse e-mail validée de yale.edu
David H. MathewsDepartment of Biochemistry and Biophysics, University of Rochester Medical CenterAdresse e-mail validée de urmc.rochester.edu
Jiapei YuanAssistent Professor, Chinese Academy of Medical Sciences & Peking Union Medical CollegeAdresse e-mail validée de ihcams.ac.cn
Yang Eric LiAssistant Professor, Washington University in St. LouisAdresse e-mail validée de wustl.edu
CHAO DIUniversity of PennsylvaniaAdresse e-mail validée de pennmedicine.upenn.edu
Michael Q. Zhangprofessor of university of texas at DallasAdresse e-mail validée de utdallas.edu
Kevin Y YipSanford Burnham Prebys Medical Discovery InstituteAdresse e-mail validée de sbpdiscovery.org
Chao ChengBaylor College of MedicineAdresse e-mail validée de bcm.edu
Yang Wu | 吴杨Associate investigator, Institute of Computing Technology, C.A.S. ChinaAdresse e-mail validée de ict.ac.cn
Xihao HuGV20 TherapeuticsAdresse e-mail validée de gv20therapeutics.com
Raymond K. AuerbachData ScientistAdresse e-mail validée de aya.yale.edu
Joel RozowskyResearch Scientist, Yale UniversityAdresse e-mail validée de yale.edu
XU TANTsinghua UniversityAdresse e-mail validée de rics.bwh.harvard.edu
Yong KongAssociate Director, Bioinformatics, Keck Foundation Biotechnology Laboratory, Yale UniversityAdresse e-mail validée de yale.edu
Ekta KhuranaWeill Cornell Medical College, Yale University, University of Pennsylvania, Indian Institute ofAdresse e-mail validée de med.cornell.edu
Ewan BirneyDirector, EMBL-EBIAdresse e-mail validée de ebi.ac.uk
Yifang Liu

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Zhi John Lu

Associate Professor, Tsinghua University

Adresse e-mail validée de tsinghua.edu.cn - Page d'accueil

Bioinformatics Noncoding RNA


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature, 2012	17187	2012
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775-1787, 2010	1142	2010
A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011	868	2011
Divergent lncRNAs regulate gene expression and lineage differentiation in pluripotent cells S Luo, JY Lu, L Liu, Y Yin, C Chen, X Han, B Wu, R Xu, W Liu, P Yan, ... Cell stem cell 18 (5), 637-652, 2016	404	2016
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014	339	2014
Characterization of Stress‐responsive lncRNAs in Arabidopsis thaliana by Integrating Expression, Epigenetic and Structural Features C Di, J Yuan, Y Wu, J Li, H Lin, L Hu, T Zhang, Y Qi, MB Gerstein, Y Guo, ... The Plant Journal, 2014	316	2014
Recurrently deregulated lncRNAs in hepatocellular carcinoma Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ... Nature communications 8 (1), 14421, 2017	303	2017
Pervasive chromatin-RNA binding protein interactions enable RNA-based regulation of transcription R Xiao, JY Chen, Z Liang, D Luo, G Chen, ZJ Lu, Y Chen, B Zhou, H Li, ... Cell 178 (1), 107-121. e18, 2019	290	2019
Improved RNA secondary structure prediction by maximizing expected pair accuracy ZJ Lu, JW Gloor, DH Mathews Rna 15 (10), 1805-1813, 2009	269	2009
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Chen, ... Genome research 21 (2), 245-254, 2011	264	2011
CLIPdb: a CLIP-seq database for protein-RNA interactions YCT Yang, C Di, B Hu, M Zhou, Y Liu, N Song, Y Li, J Umetsu, ZJ Lu BMC genomics 16, 1-8, 2015	236	2015
Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ... PLoS genetics 6 (2), e1000848, 2010	218	2010
Microarray is an efficient tool for circRNA profiling S Li, S Teng, J Xu, G Su, Y Zhang, J Zhao, S Zhang, H Wang, W Qin, ... Briefings in bioinformatics 20 (4), 1420-1433, 2019	190	2019
Efficient siRNA selection using hybridization thermodynamics ZJ Lu, DH Mathews Nucleic acids research 36 (2), 640-647, 2008	174	2008
Critical roles of long noncoding RNAs in Drosophila spermatogenesis K Wen, L Yang, T Xiong, C Di, D Ma, M Wu, Z Xue, X Zhang, L Li, ... Genome Research 26 (9), 1233-1244, 2016	164	2016
RNA biomarkers: frontier of precision medicine for cancer X Xi, T Li, Y Huang, J Sun, Y Zhu, Y Yang, ZJ Lu Non-coding RNA 3 (1), 9, 2017	160	2017
A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation ZJ Lu, DH Turner, DH Mathews Nucleic acids research 34 (17), 4912-4924, 2006	153	2006
POSTAR2: deciphering the post-transcriptional regulatory logics Y Zhu, G Xu, YT Yang, Z Xu, X Chen, B Shi, D Xie, ZJ Lu, P Wang Nucleic acids research 47 (D1), D203-D211, 2019	152	2019
Systematic identification of synergistic drug pairs targeting HIV X Tan, L Hu, LJ Luquette III, G Gao, Y Liu, H Qu, R Xi, ZJ Lu, PJ Park, ... Nature Biotechnology, 2012	147	2012
COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features L Hu, Z Xu, B Hu, ZJ Lu Nucleic acids research 45 (1), e2-e2, 2017	125	2017

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