Daniel R. Mende

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Coauteurs

Peer BorkDirector of EMBL HeidelbergAdresse e-mail validée de embl.de
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsAdresse e-mail validée de ethz.ch
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainAdresse e-mail validée de embl.de
Ivica Letunićbiobyte solutions GmbHAdresse e-mail validée de biobyte.de
edward francis delongProfessor, University of Hawaii, ManoaAdresse e-mail validée de hawaii.edu
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichAdresse e-mail validée de isb-sib.ch
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsAdresse e-mail validée de imls.uzh.ch
Georg ZellerLUMC Leiden & EMBL HeidelbergAdresse e-mail validée de embl.de
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistAdresse e-mail validée de kfst.dk
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenAdresse e-mail validée de sund.ku.dk
Luis Pedro CoelhoCentre for Microbiome Research, Queensland University of TechnologyAdresse e-mail validée de qut.edu.au
Thomas Sebastian B. SchmidtSchool of Medicine & APC Microbiome, University College CorkAdresse e-mail validée de ucc.ie
Julien TapINRAE, Université Paris-SaclayAdresse e-mail validée de inrae.fr
Alison S. WallerBrock UniversityAdresse e-mail validée de brocku.ca
Vera van Noortprofessor, KULeuvenAdresse e-mail validée de biw.kuleuven.be
Henrik Bjørn NielsenChief Scientific Officer, Clinical-Microbiomics A/SAdresse e-mail validée de clinical-microbiomics.com
Nassos TypasGroup Leader, EMBLAdresse e-mail validée de embl.de
George WeinstockDirector of Microbial Genomics, Professor, Jackson LaboratoryAdresse e-mail validée de jax.org
Shamil SunyaevProfessor of Biomedical Informatics and of Medicine (BWH), Harvard Medical SchoolAdresse e-mail validée de rics.bwh.harvard.edu
Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenAdresse e-mail validée de cpr.ku.dk

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Daniel R. Mende

Asst. Professor, Amsterdam University Medical Center, University of Amsterdam

Adresse e-mail validée de amsterdamumc.nl

Computational Biology Bioinformatics Evolution Clinical Microbiology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010	13635	2010
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011	8593	2011
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	3274	2019
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	2560	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	2018	2016
Potential of fecal microbiota for early‐stage detection of colorectal cancer G Zeller, J Tap, AY Voigt, S Sunagawa, JR Kultima, PI Costea, A Amiot, ... Molecular systems biology 10 (11), 766, 2014	1141	2014
Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50, 2013	985	2013
Metabolic dependencies drive species co-occurrence in diverse microbial communities A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015	719	2015
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	528	2013
Country-specific antibiotic use practices impact the human gut resistome K Forslund, S Sunagawa, JR Kultima, DR Mende, M Arumugam, A Typas, ... Genome research 23 (7), 1163-1169, 2013	458	2013
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019	421	2019
Accurate and universal delineation of prokaryotic species DR Mende, S Sunagawa, G Zeller, P Bork Nature methods 10 (9), 881-884, 2013	333	2013
Assessment of metagenomic assembly using simulated next generation sequencing data DR Mende, AS Waller, S Sunagawa, AI Järvelin, MM Chan, M Arumugam, ... PloS one 7 (2), e31386, 2012	285	2012
Deciphering a global network of functionally associated post‐translational modifications P Minguez, L Parca, F Diella, DR Mende, R Kumar, M Helmer‐Citterich, ... Molecular systems biology 8 (1), 599, 2012	280	2012
Role for urea in nitrification by polar marine Archaea L Alonso-Sáez, AS Waller, DR Mende, K Bakker, H Farnelid, PL Yager, ... Proceedings of the National Academy of Sciences 109 (44), 17989-17994, 2012	279	2012
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	249	2022
MOCAT: a metagenomics assembly and gene prediction toolkit JR Kultima, S Sunagawa, J Li, W Chen, H Chen, DR Mende, ... Public Library of Science 7 (10), e47656, 2012	231	2012
Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean RM Boiteau, DR Mende, NJ Hawco, MR McIlvin, JN Fitzsimmons, ... Proceedings of the National Academy of Sciences 113 (50), 14237-14242, 2016	216	2016
Inter-individual differences in the gene content of human gut bacterial species A Zhu, S Sunagawa, DR Mende, P Bork Genome biology 16, 1-13, 2015	216	2015
Environmental drivers of a microbial genomic transition zone in the ocean’s interior DR Mende, JA Bryant, FO Aylward, JM Eppley, T Nielsen, DM Karl, ... Nature Microbiology 2 (10), 1367-1373, 2017	160	2017

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