Kevin Karplus

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Richard HugheyProfessor of Computer Engineering and Biomolecular Engineering, University of California Santa CruzAdresse e-mail validée de soe.ucsc.edu
Johannes SödingMax-Planck-Institute for Multidisciplinary Sciences, GöttingenAdresse e-mail validée de mpinat.mpg.de
des higginsUniversity College DublinAdresse e-mail validée de ucd.ie
Melissa ClineAssociate Research Scientist, UC Santa Cruz Genomics InstituteAdresse e-mail validée de ucsc.edu
Rachel KarchinProfessor of Biomedical Engineering, Oncology and Computer Science, Johns Hopkins UniversityAdresse e-mail validée de jhu.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzAdresse e-mail validée de soe.ucsc.edu
Prof. Julian GoughMRC Laboratory of Molecular Biology, CambridgeAdresse e-mail validée de mrc-lmb.cam.ac.uk
Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteAdresse e-mail validée de soe.ucsc.edu
Kimmen SjolanderProfessor of Bioengineering, University of California, BerkeleyAdresse e-mail validée de berkeley.edu
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzAdresse e-mail validée de soe.ucsc.edu
David BakerUniversity of WashingtonAdresse e-mail validée de uw.edu
Yael mandel-gutfreundTechnionAdresse e-mail validée de tx.technion.ac.il
Kay HofmannProfessor of Genetics, University of CologneAdresse e-mail validée de uni-koeln.de
Karen M. OttemannUC Santa CruzAdresse e-mail validée de ucsc.edu
Tim HubbardHead Dept. Medical & Molecular Genetics, King's College London, Director of Bioinformatics, King'sAdresse e-mail validée de kcl.ac.uk
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenAdresse e-mail validée de di.ku.dk
Alex NicolauProfessor of Computer Science, University of CaliforniaAdresse e-mail validée de ics.uci.edu
Philipp BucherGroup leader in Bioinformatics, EPFL and Swiss Institute of Bioinformatics, LausanneAdresse e-mail validée de epfl.ch
Jeffrey UllmanProfessor of Computer Science, Stanford UniversityAdresse e-mail validée de stanford.edu

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Kevin Karplus

Professor of Biomolecular Engineering, University of California, Santa Cruz

Adresse e-mail validée de soe.ucsc.edu - Page d'accueil


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ... Molecular systems biology 7 (1), 539, 2011	16315	2011
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009	1505	2009
Hidden Markov models for detecting remote protein homologies. K Karplus, C Barrett, R Hughey Bioinformatics (Oxford, England) 14 (10), 846-856, 1998	1488	1998
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure J Gough, K Karplus, R Hughey, C Chothia Journal of molecular biology 313 (4), 903-919, 2001	1455	2001
Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision GM Cherf, KR Lieberman, H Rashid, CE Lam, K Karplus, M Akeson Nature biotechnology 30 (4), 344-348, 2012	725	2012
Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods J Park, K Karplus, C Barrett, R Hughey, D Haussler, T Hubbard, C Chothia Journal of Molecular Biology 284 (4), 1201-1210, 1998	701	1998
Digital synthesis of plucked-string and drum timbres K Karplus, A Strong Computer Music Journal 7 (2), 43-55, 1983	623	1983
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology K Sjölander, K Karplus, M Brown, R Hughey, A Krogh, IS Mian, ... Bioinformatics 12 (4), 327-345, 1996	482	1996
A flexible motif search technique based on generalized profiles P Bucher, K Karplus, N Moeri, K Hofmann Computers & chemistry 20 (1), 3-23, 1996	394	1996
Classifying G-protein coupled receptors with support vector machines R Karchin, K Karplus, D Haussler Bioinformatics 18 (1), 147-159, 2002	374	2002
Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction K Karplus, R Karchin, J Draper, J Casper, Y Mandel‐Gutfreund, ... Proteins: Structure, Function, and Bioinformatics 53 (S6), 491-496, 2003	364	2003
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry R Karchin, M Cline, Y Mandel‐Gutfreund, K Karplus Proteins: Structure, Function, and Bioinformatics 51 (4), 504-514, 2003	256	2003
Predicting protein structure using hidden Markov models K Karplus, K Sjölander, C Barrett, M Cline, D Haussler, R Hughey, L Holm, ... Proteins: Structure, Function, and Bioinformatics 29 (S1), 134-139, 1997	230	1997
CAFASP‐1: Critical assessment of fully automated structure prediction methods D Fischer, C Barret, K Bryson, A Elofsson, A Godzik, D Jones, KJ Karplus, ... Proteins: Structure, Function, and Bioinformatics 37 (S3), 209-217, 1999	228	1999
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands J Schreiber, ZL Wescoe, R Abu-Shumays, JT Vivian, B Baatar, K Karplus, ... Proceedings of the National Academy of Sciences 110 (47), 18910-18915, 2013	216	2013
Predicting protein structure using only sequence information K Karplus, C Barrett, M Cline, M Diekhans, L Grate, R Hughey Proteins: Structure, Function, and Bioinformatics 37 (S3), 121-125, 1999	187	1999
Identification and Characterization of RbmA, a Novel Protein Required for the Development of Rugose Colony Morphology and Biofilm Structure in Vibrio cholerae JCN Fong, K Karplus, GK Schoolnik, FH Yildiz Journal of bacteriology 188 (3), 1049-1059, 2006	185	2006
SAM-T08, HMM-based protein structure prediction K Karplus Nucleic acids research 37 (suppl_2), W492-W497, 2009	181	2009
What is the value added by human intervention in protein structure prediction? K Karplus, R Karchin, C Barrett, S Tu, M Cline, M Diekhans, L Grate, ... Proteins: Structure, Function, and Bioinformatics 45 (S5), 86-91, 2001	179	2001
Xmap: A technology mapper for table-lookup field-programmable gate arrays K Karplus Proceedings of the 28th ACM/IEEE Design Automation Conference, 240-243, 1991	177	1991

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