| The global phosphorylation landscape of SARS-CoV-2 infection M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Cell 182 (3), 685-712. e19, 2020 | 979 | 2020 |
| decoupleR: ensemble of computational methods to infer biological activities from omics data P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... Bioinformatics advances 2 (1), vbac016, 2022 | 389 | 2022 |
| Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ... Nature communications 13 (1), 3224, 2022 | 356 | 2022 |
| Gli1+ mesenchymal stromal cells are a key driver of bone marrow fibrosis and an important cellular therapeutic target RK Schneider, A Mullally, A Dugourd, F Peisker, R Hoogenboezem, ... Cell stem cell 20 (6), 785-800. e8, 2017 | 285 | 2017 |
| NADH shuttling couples cytosolic reductive carboxylation of glutamine with glycolysis in cells with mitochondrial dysfunction E Gaude, C Schmidt, PA Gammage, A Dugourd, T Blacker, SP Chew, ... Molecular cell 69 (4), 581-593. e7, 2018 | 241 | 2018 |
| MaBoSS 2.0: an environment for stochastic Boolean modeling G Stoll, B Caron, E Viara, A Dugourd, A Zinovyev, A Naldi, G Kroemer, ... Bioinformatics 33 (14), 2226-2228, 2017 | 146 | 2017 |
| Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ V Cappelletti, T Hauser, I Piazza, M Pepelnjak, L Malinovska, T Fuhrer, ... Cell 184 (2), 545-559. e22, 2021 | 145 | 2021 |
| Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular Systems Biology 17 (1), e9730, 2021 | 138 | 2021 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 100 | 2021 |
| Increased CXCL4 expression in hematopoietic cells links inflammation and progression of bone marrow fibrosis in MPN HFE Gleitz, AJF Dugourd, NB Leimkühler, IAM Snoeren, SNR Fuchs, ... Blood, The Journal of the American Society of Hematology 136 (18), 2051-2064, 2020 | 85 | 2020 |
| Metabolic communication by SGLT2 inhibition AM Billing, YC Kim, S Gullaksen, B Schrage, J Raabe, A Hutzfeldt, ... Circulation 149 (11), 860-884, 2024 | 64 | 2024 |
| Footprint-based functional analysis of multiomic data A Dugourd, J Saez-Rodriguez Current Opinion in Systems Biology 15, 82-90, 2019 | 59 | 2019 |
| SREBP1-induced fatty acid synthesis depletes macrophages antioxidant defences to promote their alternative activation G Bidault, S Virtue, K Petkevicius, HE Jolin, A Dugourd, AC Guénantin, ... Nature metabolism 3 (9), 1150-1162, 2021 | 58 | 2021 |
| BR tenOever, RD Mullins, ER Fischer, G M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Kochs, R. Grosse, A. García-Sastre, M. Vignuzzi, JR Johnson, KM Shokat, DL …, 2020 | 40 | 2020 |
| Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes A Pérez-Martí, S Ramakrishnan, J Li, A Dugourd, MR Molenaar, ... Elife 11, e74391, 2022 | 35 | 2022 |
| Converting networks to predictive logic models from perturbation signalling data with CellNOpt E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ... Bioinformatics 36 (16), 4523-4524, 2020 | 29 | 2020 |
| PHONEMeS: efficient modeling of signaling networks derived from large-scale mass spectrometry data E Gjerga, A Dugourd, L Tobalina, A Sousa, J Saez-Rodriguez Journal of Proteome Research 20 (4), 2138-2144, 2021 | 27 | 2021 |
| Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer N Berndt, A Egners, G Mastrobuoni, O Vvedenskaya, A Fragoulis, ... British Journal of Cancer 122 (2), 233-244, 2020 | 27 | 2020 |
| LIANA+: an all-in-one cell-cell communication framework D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ... BioRxiv, 2023.08. 19.553863, 2023 | 26 | 2023 |
| Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression M Sciacovelli, A Dugourd, LV Jimenez, M Yang, E Nikitopoulou, ... Nature communications 13 (1), 7830, 2022 | 26* | 2022 |
Julio Saez RodriguezHeidelberg UniversityAdresse e-mail validée de uni-heidelberg.de