Aaron Darling

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Coauteurs

Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyAdresse e-mail validée de ucdavis.edu
Nicole T. PernaProfessor of GeneticsAdresse e-mail validée de wisc.edu
Daniel L. AyresUniversity of MarylandAdresse e-mail validée de umd.edu
Marc A. SuchardProfessor, University of California, Los AngelesAdresse e-mail validée de ucla.edu
Fredrik RonquistProfessor, Swedish Museum of Natural History, Dept. Bioinformatics and GeneticsAdresse e-mail validée de nrm.se
John P. HuelsenbeckUniversity of California, BerkeleyAdresse e-mail validée de berkeley.edu
Sebastian HöhnaEmmy Noether Research Group Leader, Ludwig-Maximilians-Universität, MünchenAdresse e-mail validée de lmu.de
Bret LargetProfessor of Statistics and of Botany, University of WisconsinAdresse e-mail validée de wisc.edu
Steven P. DjordjevicProfessorAdresse e-mail validée de uts.edu.au
Guillaume Jospinbioinformatician at AnimalBiomeAdresse e-mail validée de animalbiome.com
Matthew Z DeMaereAIMI Pathway fellow, University of Technology SydneyAdresse e-mail validée de uts.edu.au
David CoilUC DavisAdresse e-mail validée de ucdavis.edu
Catherine M BurkeUniversity of Technology SydneyAdresse e-mail validée de uts.edu.au
Liang LiuProfessor of Statistics, UGAAdresse e-mail validée de uga.edu
Jenna Morgan LangPostdoc in the lab of Jonathan Eisen at UC DavisAdresse e-mail validée de lbl.gov
Alexander SczyrbaForschungszentrum Jülich (IBG-5), Bielefeld University, Centrum for Biotechnology (CeBiTec)Adresse e-mail validée de fz-juelich.de
Toni ChapmanNSW Department of Primary IndustriesAdresse e-mail validée de dpi.nsw.gov.au
Mark A. RaganInstitute for Molecular Bioscience, The University of QueenslandAdresse e-mail validée de uq.edu.au
Xavier DidelotUniversity of WarwickAdresse e-mail validée de warwick.ac.uk
Piklu Roy ChowdhurySenior Research Associate at the Australian Institute for Microbiology and Infection UTS, AustraliaAdresse e-mail validée de uts.edu.au

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Aaron Darling

Illumina Australia; Professor @ University of Technology Sydney

Adresse e-mail validée de illumina.com - Page d'accueil

algorithms for sequence analysis genome evolution high throughput sequencing


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space F Ronquist, M Teslenko, P Van Der Mark, DL Ayres, A Darling, S Höhna, ... Systematic biology 61 (3), 539-542, 2012	26472	2012
Mauve: multiple alignment of conserved genomic sequence with rearrangements ACE Darling, B Mau, FR Blattner, NT Perna Genome research 14 (7), 1394-1403, 2004	4975	2004
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement AE Darling, B Mau, NT Perna PloS one 5 (6), e11147, 2010	4092	2010
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	2450	2013
The Amphimedon queenslandica genome and the evolution of animal complexity M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ... Nature 466 (7307), 720-726, 2010	1176	2010
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2014	1123	2014
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	798	2017
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ... Systematic biology 61 (1), 170-173, 2012	699	2012
PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014	678*	2014
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	638	2011
Reordering contigs of draft genomes using the Mauve aligner AI Rissman, B Mau, BS Biehl, AE Darling, JD Glasner, NT Perna Bioinformatics 25 (16), 2071-2073, 2009	609	2009
The design, implementation, and evaluation of mpiBLAST A Darling, L Carey, W Feng proceedings of ClusterWorld 2003, 13-15, 2003	581	2003
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T J Wei, MB Goldberg, V Burland, MM Venkatesan, W Deng, G Fournier, ... Infection and immunity 71 (5), 2775-2786, 2003	515	2003
An integrated pipeline for de novo assembly of microbial genomes A Tritt, JA Eisen, MT Facciotti, AE Darling Public Library of Science 7 (9), e42304, 2012	499	2012
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018	362	2018
Metagenomic sequencing of an in vitro-simulated microbial community JL Morgan, AE Darling, JA Eisen PloS one 5 (4), e10209, 2010	290	2010
Dynamics of genome rearrangement in bacterial populations AE Darling, I Miklós, MA Ragan PLoS genetics 4 (7), e1000128, 2008	277	2008
A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021	255	2021
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	249	2022
Patterns of gene flow define species of thermophilic Archaea H Cadillo-Quiroz, X Didelot, NL Held, A Herrera, A Darling, ML Reno, ... PLoS biology 10 (2), e1001265, 2012	240	2012

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