Daniel McDonald

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDAdresse e-mail validée de ucsd.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoAdresse e-mail validée de ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityAdresse e-mail validée de nau.edu
Yoshiki Vázquez-BaezaBiomeSenseAdresse e-mail validée de biomesense.com
Pieter C DorresteinUCSDAdresse e-mail validée de ucsd.edu
James T. MortonAdresse e-mail validée de gutzanalytics.com
Qiyun ZhuArizona State UniversityAdresse e-mail validée de asu.edu
Se Jin SongUniversity of California San DiegoAdresse e-mail validée de ucsd.edu
Zhenjiang Zech Xustate key lab of food science and resources, nuAdresse e-mail validée de ucsd.edu
Jesse RR ZaneveldAssociate Professor, Division of Biological Sciences, University of Washington, BothellAdresse e-mail validée de uw.edu
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiAdresse e-mail validée de mssm.edu
Jai Ram RideoutOne CodexAdresse e-mail validée de onecodex.com
Julia GoodrichGraduate Student, Cornell UniversityAdresse e-mail validée de cornell.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthAdresse e-mail validée de hsph.harvard.edu
Dan KnightsUniversity of MinnesotaAdresse e-mail validée de umn.edu
Tomasz KościółekSano Centre for Computational MedicineAdresse e-mail validée de sanoscience.org
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandAdresse e-mail validée de uq.edu.au
Embriette HydeFreelance Science Writer and Research ConsultantAdresse e-mail validée de drhydenotjekyll.com
Jack A GilbertUniversity of California, San DiegoAdresse e-mail validée de ucsd.edu
William A WaltersPost-doc, Cornell UniversityAdresse e-mail validée de colorado.edu

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Daniel McDonald

American Gut, Knight Lab, Department of Pediatrics, UCSD

Adresse e-mail validée de ucsd.edu - Page d'accueil

microbiome citizen science


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	36041	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	16192	2019
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	10658	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	8902	2013
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012	5395	2012
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	3489	2014
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2472	2012
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2432	2017
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	1620	2018
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), 10.1128/msystems. 00191-16, 2017	1472	2017
Strains, functions and dynamics in the expanded Human Microbiome Project J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ... Nature 550 (7674), 61-66, 2017	1244	2017
Dynamics of the human gut microbiome in inflammatory bowel disease J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ... Nature microbiology 2 (5), 1-7, 2017	1161	2017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1005	2018
GABA-modulating bacteria of the human gut microbiota P Strandwitz, KH Kim, D Terekhova, JK Liu, A Sharma, J Levering, ... Nature microbiology 4 (3), 396-403, 2019	921	2019
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012	826	2012
Regional variation limits applications of healthy gut microbiome reference ranges and disease models Y He, W Wu, HM Zheng, P Li, D McDonald, HF Sheng, MX Chen, ... Nature medicine 24 (10), 1532-1535, 2018	796	2018
Forensic identification using skin bacterial communities N Fierer, CL Lauber, N Zhou, D McDonald, EK Costello, R Knight Proceedings of the National Academy of Sciences 107 (14), 6477-6481, 2010	787	2010
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018	724	2018
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014	637	2014
Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018	591	2018

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