Paul D. Adams

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Pavel AfonineScientist at LBNLAdresse e-mail validée de lbl.gov
Randy J ReadProfessor of Protein CrystallographyAdresse e-mail validée de cam.ac.uk
Axel BrungerProfessor of Molecular and Cellular Physiology, Stanford UniversityAdresse e-mail validée de stanford.edu
Dr Airlie J. McCoyUniversity of CambridgeAdresse e-mail validée de cam.ac.uk
Peter ZwartLawrence Berkeley National LaboratoriesAdresse e-mail validée de lbl.gov
Li-Wei HungLos Alamos National LaboratoryAdresse e-mail validée de lanl.gov
Jane S. RichardsonProfessor of Biochemistry, Duke UniversityAdresse e-mail validée de duke.edu
Jay KeaslingProfessor of Chemical & Biomolecular Engineering and of Bioengineering, University of CaliforniaAdresse e-mail validée de lbl.gov
Jeff HeaddJohnson & Johnson Innovative MedicineAdresse e-mail validée de its.jnj.com
David C. RichardsonProfessor of Biochemistry, Duke UniversityAdresse e-mail validée de kinemage.biochem.duke.edu
Blake A. SimmonsLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Sacha Urzhumtsevprofessor, Université de Lorraine; IGBMCAdresse e-mail validée de igbmc.fr
Christopher J PetzoldLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Luke RiceAssociate Professor of Biophysics, UT Southwestern Medical CenterAdresse e-mail validée de UTSouthwestern.edu
Billy K. PoonLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Dorothee LiebschnerLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Jose Henrique PereiraLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Piet GrosBijvoet Center, Utrecht Life Science, Utrecht University, The NetherlandsAdresse e-mail validée de uu.nl
Ian W. DavisLead Data Scientist, Bayer Crop ScienceAdresse e-mail validée de bayer.com
Edward E.K. BaidooJoint BioEnergy Institute - Lawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov

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Paul D. Adams

Lawrence Berkeley Laboratory & University of California Berkeley

Adresse e-mail validée de lbl.gov - Page d'accueil

Crystallography Cryo-EM Computational methods Structural biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
PHENIX: a comprehensive Python-based system for macromolecular structure solution PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ... Acta Crystallographica Section D: Biological Crystallography 66 (2), 213-221, 2010	24318	2010
Phaser crystallographic software AJ McCoy, RW Grosse-Kunstleve, PD Adams, MD Winn, LC Storoni, ... Journal of applied crystallography 40 (4), 658-674, 2007	21447	2007
Crystallography & NMR system: A new software suite for macromolecular structure determination AT Brünger, PD Adams, GM Clore, WL DeLano, P Gros, ... Biological Crystallography 54 (5), 905-921, 1998	20700	1998
Towards automated crystallographic structure refinement with phenix. refine PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 68 (4), 352-367, 2012	5412	2012
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ... Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019	5051	2019
PHENIX: building new software for automated crystallographic structure determination PD Adams, RW Grosse-Kunstleve, LW Hung, TR Ioerger, AJ McCoy, ... Acta Crystallographica Section D: Biological Crystallography 58 (11), 1948-1954, 2002	4918	2002
Accurate prediction of protein structures and interactions using a three-track neural network M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ... Science 373 (6557), 871-876, 2021	4152	2021
MolProbity: more and better reference data for improved all‐atom structure validation CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ... Protein Science 27 (1), 293-315, 2018	3398	2018
Real-space refinement in PHENIX for cryo-EM and crystallography PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ... Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018	2358	2018
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, PH Zwart, ... Acta Crystallographica Section D: Biological Crystallography 64 (1), 61-69, 2008	1645	2008
Structural basis for double-stranded RNA processing by Dicer IJ MacRae, K Zhou, F Li, A Repic, AN Brooks, WZ Cande, PD Adams, ... Science 311 (5758), 195-198, 2006	1334	2006
electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation NW Moriarty, RW Grosse-Kunstleve, PD Adams Acta Crystallographica Section D: Biological Crystallography 65 (10), 1074-1080, 2009	1308	2009
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard TC Terwilliger, PD Adams, RJ Read, AJ McCoy, NW Moriarty, ... Acta Crystallographica Section D: Biological Crystallography 65 (6), 582-601, 2009	938	2009
The Phenix software for automated determination of macromolecular structures PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ... Methods 55 (1), 94-106, 2011	887	2011
EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ... Nature methods 12 (10), 943-946, 2015	791	2015
New tools for the analysis and validation of cryo-EM maps and atomic models PV Afonine, BP Klaholz, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 74 (9), 814-840, 2018	649	2018
Polder maps: improving OMIT maps by excluding bulk solvent D Liebschner, PV Afonine, NW Moriarty, BK Poon, OV Sobolev, ... Acta Crystallographica Section D: Structural Biology 73 (2), 148-157, 2017	632	2017
Automated structure solution with the PHENIX suite PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung, TR Ioerger, ... Structural proteomics: high-throughput methods, 419-435, 2008	590	2008
Engineering dynamic pathway regulation using stress-response promoters RH Dahl, F Zhang, J Alonso-Gutierrez, E Baidoo, TS Batth, ... Nature biotechnology 31 (11), 1039-1046, 2013	526	2013
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement PD Adams, NS Pannu, RJ Read, AT Brünger Proceedings of the National Academy of Sciences 94 (10), 5018-5023, 1997	526	1997

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