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Mikel HernaezCenter for Applied Medical Research (CIMA), University of NavarraAdresse e-mail validée de unav.es
Tsachy WeissmanProfessor of Electrical Engineering at Stanford UniversityAdresse e-mail validée de stanford.edu
Shubham ChandakSr. Applied Scientist, Amazon AWS S3Adresse e-mail validée de amazon.com
Kedar TatwawadiStanford UniversityAdresse e-mail validée de stanford.edu
Pablo SmircichIIBCE, MEC / F. de ciencias. Universidad de la República. UruguayAdresse e-mail validée de fcien.edu.uy
Gadiel SeroussiResearcher, Gadiel Seroussi ConsultingAdresse e-mail validée de ieee.org
Mohit GoyalEngineer at GoogleAdresse e-mail validée de google.com
Jose Sotelo-SilveiraGenomics Department IIBCE. DBCM, School of Sciences, UdelaR.Adresse e-mail validée de iibce.edu.uy
Kartik VenkatGraduate Student, Stanford UniversityAdresse e-mail validée de alumni.stanford.edu
Alexandros ManolakosSenior Staff Systems Engineer, WR&D Qualcomm Inc. San Diego, CAAdresse e-mail validée de stanford.edu
Guillermo Dufort y ÁlvarezFacultad de Ingeniería, Universidad de la República, UruguayAdresse e-mail validée de fing.edu.uy
Rachel GoldfederStanford UniversityAdresse e-mail validée de stanford.edu
Euan A. AshleyChair, Department of Medicine, Stanford UniversityAdresse e-mail validée de stanford.edu
Albert NoAssociate Professor of Department of Artificial Intelligence at Yonsei UniversityAdresse e-mail validée de yonsei.ac.kr
Olivier GevaertStanford UniversityAdresse e-mail validée de stanford.edu
Greg MalysaTimesysAdresse e-mail validée de timesys.com
Milind RaoAmazonAdresse e-mail validée de amazon.com
Mainak ChowdhuryZaiNar | Stanford University | IIT KanpurAdresse e-mail validée de stanford.edu
Dinesh BharadiaAssociate Professor of ECE at UCSDAdresse e-mail validée de ucsd.edu
Pedro M CrespoProfessor Electrical Eng., University of NavarraAdresse e-mail validée de tecnun.es

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idoia ochoa

University of Navarra

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Computational Biology Compression Machine Learning


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Deepzip: Lossless data compression using recurrent neural networks M Goyal, K Tatwawadi, S Chandak, I Ochoa arXiv preprint arXiv:1811.08162, 2018	111	2018
SPRING: a next-generation compressor for FASTQ data S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman Bioinformatics 35 (15), 2674-2676, 2019	94	2019
Effect of lossy compression of quality scores on variant calling I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley Briefings in bioinformatics 18 (2), 183-194, 2017	89	2017
QVZ: lossy compression of quality values G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman Bioinformatics 31 (19), 3122-3129, 2015	85	2015
QualComp: a new lossy compressor for quality scores based on rate distortion theory I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona BMC bioinformatics 14, 1-16, 2013	67	2013
Genomic data compression M Hernaez, D Pavlichin, T Weissman, I Ochoa Annual Review of Biomedical Data Science 2 (1), 19-37, 2019	61	2019
FaStore: a space-saving solution for raw sequencing data Ł Roguski, I Ochoa, M Hernaez, S Deorowicz Bioinformatics 34 (16), 2748-2756, 2018	59	2018
iDoComp: a compression scheme for assembled genomes I Ochoa, M Hernaez, T Weissman Bioinformatics 31 (5), 626-633, 2014	59	2014
DZip: Improved general-purpose loss less compression based on novel neural network modeling M Goyal, K Tatwawadi, S Chandak, I Ochoa 2021 data compression conference (DCC), 153-162, 2021	54	2021
Reference based genome compression BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman 2012 IEEE Information Theory Workshop, 427-431, 2012	44	2012
CaMoDi: a new method for cancer module discovery A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert BMC genomics 15, 1-10, 2014	27	2014
GTRAC: fast retrieval from compressed collections of genomic variants K Tatwawadi, M Hernaez, I Ochoa, T Weissman Bioinformatics 32 (17), i479-i486, 2016	23	2016
Aligned genomic data compression via improved modeling I Ochoa, M Hernaez, T Weissman Journal of bioinformatics and computational biology 12 (06), 1442002, 2014	21	2014
An introduction to MPEG-G, the new ISO standard for genomic information representation C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ... bioRxiv, 426353, 2018	20	2018
A cluster-based approach to compression of quality scores M Hernaez, I Ochoa, T Weissman 2016 Data Compression Conference (DCC), 261-270, 2016	17	2016
ENANO: Encoder for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín Bioinformatics 36 (16), 4506-4507, 2020	16	2020
RENANO: a REference-based compressor for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo-Silveira, I Ochoa, ... Bioinformatics 37 (24), 4862-4864, 2021	14	2021
Denoising of aligned genomic data I Fischer-Hwang, I Ochoa, T Weissman, M Hernaez Scientific reports 9 (1), 15067, 2019	14	2019
SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes J Peng, G Serrano, IM Traniello, ME Calleja-Cervantes, UV Chembazhi, ... Communications biology 5 (1), 351, 2022	12	2022
GeneComp, a new reference-based compressor for SAM files R Long, M Hernaez, I Ochoa, T Weissman 2017 Data Compression Conference (DCC), 330-339, 2017	12	2017

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