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Arif Ozgun Harmanci
Arif Ozgun Harmanci
University of Texas Health Science Center at Houston
Adresse e-mail validée de harmancilab.org - Page d'accueil
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An integrated encyclopedia of DNA elements in the human genome.
EP Consortium.
Nature 6 (489), 7414, 2012
17186*2012
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
85292012
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1925*2020
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
17162012
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
4582014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4252013
AlleleSeq: analysis of allele‐specific expression and binding in a network framework
J Rozowsky, A Abyzov, J Wang, P Alves, D Raha, A Harmanci, J Leng, ...
Molecular systems biology 7 (1), 522, 2011
4062011
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
3392014
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
AO Harmanci, G Sharma, DH Mathews
BMC bioinformatics 8, 1-21, 2007
1522007
CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data
A Serin Harmanci, AO Harmanci, X Zhou
Nature communications 11 (1), 89, 2020
1412020
Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
1352020
HDAC inhibitors elicit metabolic reprogramming by targeting super-enhancers in glioblastoma models
TTT Nguyen, Y Zhang, E Shang, C Shu, C Torrini, J Zhao, E Bianchetti, ...
The Journal of clinical investigation 130 (7), 3699-3716, 2020
1332020
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
1302020
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences
AO Harmanci, G Sharma, DH Mathews
BMC bioinformatics 12, 1-22, 2011
1152011
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
J Chen, J Rozowsky, TR Galeev, A Harmanci, R Kitchen, J Bedford, ...
Nature communications 7 (1), 11101, 2016
1082016
Quantification of private information leakage from phenotype-genotype data: linking attacks
A Harmanci, M Gerstein
Nature methods 13 (3), 251-256, 2016
1052016
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 5903, 2015
942015
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment
L Habegger, S Balasubramanian, DZ Chen, E Khurana, A Sboner, ...
Bioinformatics 28 (17), 2267-2269, 2012
842012
Ultrafast homomorphic encryption models enable secure outsourcing of genotype imputation
M Kim, AO Harmanci, JP Bossuat, S Carpov, JH Cheon, I Chillotti, W Cho, ...
Cell systems 12 (11), 1108-1120. e4, 2021
682021
MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework
A Harmanci, J Rozowsky, M Gerstein
Genome biology 15, 1-15, 2014
682014
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