| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1293 | 2018 |
| Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020 | 1186 | 2020 |
| Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction D Laehnemann, A Borkhardt, AC McHardy Briefings in bioinformatics 17 (1), 154-179, 2016 | 357 | 2016 |
| When the most potent combination of antibiotics selects for the greatest bacterial load: the smile-frown transition R Pena-Miller, D Laehnemann, G Jansen, A Fuentes-Hernandez, ... PLoS biology 11 (4), e1001540, 2013 | 251 | 2013 |
| Five percent of healthy newborns have an ETV6-RUNX1 fusion as revealed by DNA-based GIPFEL screening D Schäfer, M Olsen, D Lähnemann, M Stanulla, R Slany, K Schmiegelow, ... Blood, The Journal of the American Society of Hematology 131 (7), 821-826, 2018 | 128 | 2018 |
| Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes L Masri, A Branca, AE Sheppard, A Papkou, D Laehnemann, ... PLoS biology 13 (6), e1002169, 2015 | 93 | 2015 |
| Genomics of rapid adaptation to antibiotics: convergent evolution and scalable sequence amplification D Laehnemann, R Peña-Miller, P Rosenstiel, R Beardmore, G Jansen, ... Genome biology and evolution 6 (6), 1287-1301, 2014 | 67 | 2014 |
| Neoadjuvant nivolumab with or without relatlimab in resectable non-small-cell lung cancer: a randomized phase 2 trial M Schuler, K Cuppens, T Plönes, M Wiesweg, B Du Pont, B Hegedus, ... Nature Medicine 30 (6), 1602-1611, 2024 | 28 | 2024 |
| The optimal deployment of synergistic antibiotics: a control-theoretic approach R Peña-Miller, D Lähnemann, H Schulenburg, M Ackermann, ... Journal of The Royal Society Interface 9 (75), 2488-2502, 2012 | 25 | 2012 |
| Selecting against antibiotic-resistant pathogens: optimal treatments in the presence of commensal bacteria R Peña-Miller, D Lähnemann, H Schulenburg, M Ackermann, ... Bulletin of mathematical biology 74, 908-934, 2012 | 22 | 2012 |
| Accurate and scalable variant calling from single cell DNA sequencing data with ProSolo D Lähnemann, J Köster, U Fischer, A Borkhardt, AC McHardy, ... Nature communications 12 (1), 6744, 2021 | 20 | 2021 |
| 12 Grand challenges in single-cell data science D Laehnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... PeerJ Preprints, 2019 | 8 | 2019 |
| Pancreatic cancer acquires resistance to MAPK pathway inhibition by clonal expansion and adaptive DNA hypermethylation LK Godfrey, J Forster, ST Liffers, C Schröder, J Köster, L Henschel, ... Clinical Epigenetics 16 (1), 13, 2024 | 6 | 2024 |
| Insane in the vembrane: filtering and transforming VCF/BCF files T Hartmann, C Schröder, E Kuthe, D Lähnemann, J Köster Bioinformatics 39 (1), btac810, 2023 | 5 | 2023 |
| Scientific Software-the role of best practices and recommendations B Fritzsch, E Bernstein, W Castell, M Diesmann, H Haas, M Hammitzsch, ... EGU General Assembly Conference Abstracts, 3294, 2017 | 1 | 2017 |
| Helmholtz Open Science Workshop „Zugang zu und Nachnutzung von wissenschaftlicher Software “# hgfos16 KS Scheliga, H Pampel, E Bernstein, C Bruch, W zu Castell, M Diesmann, ... Helmholtz-Gemeinschaft, 2017 | 1 | 2017 |
| When the Most Potent Combination of Antibiotics Selects for R Pena-Miller, D Laehnemann, G Jansen, A Fuentes-Hernandez, ... | 1 | 2013 |
| Microphaser-a small-scale phasing approach for improved personalized neopeptidome creation J Forster, D Lähnemann, A Paschen, A Schramm, M Schuler, J Köster bioRxiv, 2021.08. 11.455827, 2021 | | 2021 |
| ProSolo: Accurate variant calling from single cell DNA sequencing data D Lähnemann, J Köster, U Fischer, A Borkhardt, AC McHardy, ... bioRxiv, 2020.04. 27.064071, 2020 | | 2020 |
| Helmholtz Open Science Workshop „Zugang zu und Nachnutzung von wissenschaftlicher Software “# hgfos16: Report; November 2016 KS Scheliga, H Pampel, E Bernstein, C Bruch, W zu Castell, M Diesmann, ... Deutsches GeoForschungsZentrum GFZ, 2017 | | 2017 |
