| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17200 | 2012 |
| RNA velocity of single cells G La Manno, R Soldatov, A Zeisel, E Braun, H Hochgerner, V Petukhov, ... Nature 560 (7719), 494-498, 2018 | 3283 | 2018 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2311 | 2012 |
| Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing D Usoskin, A Furlan, S Islam, H Abdo, P Lönnerberg, D Lou, ... Nature neuroscience 18 (1), 145-153, 2015 | 2092 | 2015 |
| Bayesian approach to single-cell differential expression analysis PV Kharchenko, L Silberstein, DT Scadden Nature methods 11 (7), 740-742, 2014 | 1408 | 2014 |
| Design and analysis of ChIP-seq experiments for DNA-binding proteins PV Kharchenko, MY Tolstorukov, PJ Park Nature biotechnology 26 (12), 1351-1359, 2008 | 1106 | 2008 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1102 | 2010 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 992 | 2011 |
| Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain BB Lake, S Chen, BC Sos, J Fan, GE Kaeser, YC Yung, TE Duong, D Gao, ... Nature biotechnology 36 (1), 70-80, 2018 | 900 | 2018 |
| Landscape of somatic retrotransposition in human cancers E Lee, R Iskow, L Yang, O Gokcumen, P Haseley, LJ Luquette III, JG Lohr, ... Science 337 (6097), 967-971, 2012 | 803 | 2012 |
| Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 493 | 2021 |
| An assessment of histone-modification antibody quality TA Egelhofer, A Minoda, S Klugman, K Lee, P Kolasinska-Zwierz, ... Nature structural & molecular biology 18 (1), 91-93, 2011 | 493 | 2011 |
| The genomic binding sites of a noncoding RNA MD Simon, CI Wang, PV Kharchenko, JA West, BA Chapman, ... Proceedings of the National Academy of Sciences 108 (51), 20497-20502, 2011 | 467 | 2011 |
| Spatiotemporal structure of cell fate decisions in murine neural crest R Soldatov, M Kaucka, ME Kastriti, J Petersen, T Chontorotzea, ... Science 364 (6444), eaas9536, 2019 | 444 | 2019 |
| The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019 | 440 | 2019 |
| Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2 H Specht, E Emmott, AA Petelski, RG Huffman, DH Perlman, M Serra, ... Genome biology 22, 1-27, 2021 | 432 | 2021 |
| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 425 | 2014 |
| Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia DA Landau, K Clement, MJ Ziller, P Boyle, J Fan, H Gu, K Stevenson, ... Cancer cell 26 (6), 813-825, 2014 | 393 | 2014 |
| Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis J Fan, N Salathia, R Liu, GE Kaeser, YC Yung, JL Herman, F Kaper, ... Nature methods 13 (3), 241-244, 2016 | 387 | 2016 |
| A region of the human HOXD cluster that confers polycomb-group responsiveness CJ Woo, PV Kharchenko, L Daheron, PJ Park, RE Kingston Cell 140 (1), 99-110, 2010 | 379 | 2010 |