| A subgraph isomorphism algorithm and its application to biochemical data V Bonnici, R Giugno, A Pulvirenti, D Shasha, A Ferro BMC bioinformatics 14, 1-13, 2013 | 292 | 2013 |
| Enhancing graph database indexing by suffix tree structure V Bonnici, A Ferro, R Giugno, A Pulvirenti, D Shasha Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010 | 83 | 2010 |
| miRandola 2017: a curated knowledge base of non-invasive biomarkers F Russo, S Di Bella, F Vannini, G Berti, F Scoyni, HV Cook, A Santos, ... Nucleic acids research 46 (D1), D354-D359, 2018 | 82 | 2018 |
| Grapes: A software for parallel searching on biological graphs targeting multi-core architectures R Giugno, V Bonnici, N Bombieri, A Pulvirenti, A Ferro, D Shasha PloS one 8 (10), e76911, 2013 | 72 | 2013 |
| On the variable ordering in subgraph isomorphism algorithms V Bonnici, R Giugno IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (1 …, 2017 | 65 | 2017 |
| DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference S Alaimo, V Bonnici, D Cancemi, A Ferro, R Giugno, A Pulvirenti BMC systems biology 9, 1-11, 2015 | 55 | 2015 |
| LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis V Bonnici, S Caligola, G Fiorini, L Giudice, R Giugno 2019 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2019 | 36 | 2019 |
| A knowledge base for the discovery of function, diagnostic potential and drug effects on cellular and extracellular miRNAs F Russo, S Di Bella, V Bonnici, A Laganà, G Rainaldi, M Pellegrini, ... BMC genomics 15, 1-7, 2014 | 35 | 2014 |
| Informational laws of genome structures V Bonnici, V Manca Scientific reports 6 (1), 28840, 2016 | 34 | 2016 |
| Comprehensive reconstruction and visualization of non-coding regulatory networks in human V Bonnici, F Russo, N Bombieri, A Pulvirenti, R Giugno Frontiers in bioengineering and biotechnology 2, 69, 2014 | 33 | 2014 |
| Arena-Idb: a platform to build human non-coding RNA interaction networks V Bonnici, G De Caro, G Constantino, S Liuni, D D’Elia, N Bombieri, ... | 22 | 2018 |
| PanDelos: a dictionary-based method for pan-genome content discovery V Bonnici, R Giugno, V Manca BMC Bioinformatics 19 (15), 48-59, 2018 | 20 | 2018 |
| NetMatchStar: an enhanced Cytoscape network querying app F Rinnone, G Micale, V Bonnici, GD Bader, D Shasha, A Ferro, ... F1000Research 4, 479, 2015 | 19 | 2015 |
| Challenges in gene-oriented approaches for pangenome content discovery V Bonnici, E Maresi, R Giugno Briefings in Bioinformatics, 1-11, 2020 | 18 | 2020 |
| Infogenomics Tools: A Computational Suite for Informational Analyses of Genomes V Bonnici, V Manca Journal of Bioinformatics and Proteomics Review 1 (1), 2015 | 18 | 2015 |
| APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks V Bonnici, F Busato, G Micale, N Bombieri, A Pulvirenti, R Giugno Bioinformatics 32 (14), 2159-2166, 2016 | 12 | 2016 |
| Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering S Avesani, E Viesi, L Alessandrì, G Motterle, V Bonnici, M Beccuti, ... GigaScience 11, giac075, 2022 | 10 | 2022 |
| GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs M Tognon, V Bonnici, E Garrison, R Giugno, L Pinello PLoS computational biology 17 (9), e1009444, 2021 | 10 | 2021 |
| Multiri: Fast subgraph matching in labeled multigraphs G Micale, V Bonnici, A Ferro, D Shasha, R Giugno, A Pulvirenti arXiv preprint arXiv:2003.11546, 2020 | 10 | 2020 |
| GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases N Licheri, V Bonnici, M Beccuti, R Giugno BMC bioinformatics 22, 1-24, 2021 | 9 | 2021 |
Giugno RosalbaProfessor University of VeronaVahvistettu sähköpostiosoite verkkotunnuksessa univr.it