| SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles N Papili Gao, SMM Ud-Dean, O Gandrillon, R Gunawan Bioinformatics 34 (2), 258-266, 2018 | 231 | 2018 |
| Rates of asymptomatic respiratory virus infection across age groups M Galanti, R Birger, M Ud-Dean, I Filip, H Morita, D Comito, S Anthony, ... Epidemiology & Infection 147, e176, 2019 | 80 | 2019 |
| Structural explanation for the effect of humidity on persistence of airborne virus: seasonality of influenza SMM Ud-Dean Journal of Theoretical Biology 264 (3), 822-829, 2010 | 79 | 2010 |
| Danger avoidance: An evolutionary explanation of uncanny valley MM Moosa, SMM Ud-Dean Biological Theory 5, 12-14, 2010 | 75 | 2010 |
| Longitudinal active sampling for respiratory viral infections across age groups M Galanti, R Birger, M Ud‐Dean, I Filip, H Morita, D Comito, S Anthony, ... Influenza and other respiratory viruses 13 (3), 226-232, 2019 | 70 | 2019 |
| Asymptomatic shedding of respiratory virus among an ambulatory population across seasons R Birger, H Morita, D Comito, I Filip, M Galanti, B Lane, C Ligon, ... Msphere 3 (4), 10.1128/msphere. 00249-18, 2018 | 60 | 2018 |
| Mild COVID-19 imprints a long-term inflammatory eicosanoid-and chemokine memory in monocyte-derived macrophages S Bohnacker, F Hartung, F Henkel, A Quaranta, J Kolmert, A Priller, ... Mucosal Immunology 15 (3), 515-524, 2022 | 58 | 2022 |
| Optimal design of gene knockout experiments for gene regulatory network inference SMM Ud-Dean, R Gunawan Bioinformatics 32 (6), 875-883, 2016 | 40 | 2016 |
| A theoretical model for template-free synthesis of long DNA sequence SM Minhaz Ud-Dean Systems and synthetic biology 2, 67-73, 2008 | 31 | 2008 |
| The role of dominance hierarchy in the evolution of social species MM Moosa, SMM UD‐DEAN Journal for the Theory of Social Behaviour 41 (2), 203-208, 2011 | 30 | 2011 |
| Ensemble inference and inferability of gene regulatory networks SMM Ud-Dean, R Gunawan PloS one 9 (8), e103812, 2014 | 29 | 2014 |
| Linking imaging to omics utilizing image-guided tissue extraction JA Disselhorst, MA Krueger, SMM Ud-Dean, I Bezrukov, MA Jarboui, ... Proceedings of the National Academy of Sciences 115 (13), E2980-E2987, 2018 | 24 | 2018 |
| TRaCE+: ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments SMM Ud-Dean, S Heise, S Klamt, R Gunawan BMC bioinformatics 17, 1-14, 2016 | 16 | 2016 |
| Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour Y Amar, D Rogner, RL Silva, BU Foesel, M Ud-Dean, I Lagkouvardos, ... Microbiome 11 (1), 162, 2023 | 14 | 2023 |
| Impact of the arterial input function recording method on kinetic parameters in small-animal PET H Napieczynska, A Kolb, P Katiyar, M Tonietto, M Ud-Dean, R Stumm, ... Journal of Nuclear Medicine 59 (7), 1159-1164, 2018 | 11 | 2018 |
| The oncology biomarker discovery framework reveals cetuximab and bevacizumab response patterns in metastatic colorectal cancer AJ Ohnmacht, A Stahler, S Stintzing, DP Modest, JW Holch, ... Nature Communications 14 (1), 5391, 2023 | 9 | 2023 |
| Active surveillance documents rates of clinical care seeking due to respiratory illness M Galanti, D Comito, C Ligon, B Lane, N Matienzo, S Ibrahim, A Shittu, ... Influenza and Other Respiratory Viruses 14 (5), 499-506, 2020 | 8 | 2020 |
| Gene regulatory network inference using time-stamped cross-sectional single cell expression data NP Gao, SMM Ud-Dean, R Gunawan IFAC-PapersOnLine 49 (26), 147-152, 2016 | 4 | 2016 |
| Kinetics of optical control of enzyme activity with photoswitchable inhibitors SMM Ud-Dean Interdisciplinary Sciences: Computational Life Sciences 3, 79-90, 2011 | 4 | 2011 |
| A multimodal cross-species comparison of pancreas development H Lickert, K Yang, H Spitzer, M Sterr, K Hrovatin, X Zhang, E Setyono, ... | 3 | 2024 |
