| An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein–protein complexes T Kortemme, AV Morozov, D Baker Journal of molecular biology 326 (4), 1239-1259, 2003 | 668 | 2003 |
| Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE BC Foat, AV Morozov, HJ Bussemaker Bioinformatics 22 (14), e141-e149, 2006 | 335 | 2006 |
| Gene regulation by nucleosome positioning L Bai, AV Morozov Trends in genetics 26 (11), 476-483, 2010 | 331 | 2010 |
| Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations AV Morozov, T Kortemme, K Tsemekhman, D Baker Proceedings of the National Academy of Sciences 101 (18), 6946-6951, 2004 | 315 | 2004 |
| Using DNA mechanics to predict in vitro nucleosome positions and formation energies AV Morozov, K Fortney, DA Gaykalova, VM Studitsky, J Widom, ED Siggia Nucleic acids research 37 (14), 4707-4722, 2009 | 224 | 2009 |
| Protein–DNA binding specificity predictions with structural models AV Morozov, JJ Havranek, D Baker, ED Siggia Nucleic acids research 33 (18), 5781-5798, 2005 | 224 | 2005 |
| An improved protein decoy set for testing energy functions for protein structure prediction J Tsai, R Bonneau, AV Morozov, B Kuhlman, CA Rohl, D Baker Proteins: Structure, Function, and Bioinformatics: Structure, Function, and …, 2003 | 212 | 2003 |
| Protein–protein docking predictions for the CAPRI experiment JJ Gray, SE Moughon, T Kortemme, O Schueler‐Furman, KMS Misura, ... Proteins: Structure, Function, and Bioinformatics 52 (1), 118-122, 2003 | 136 | 2003 |
| Simple physical models connect theory and experiment in protein folding kinetics E Alm, AV Morozov, T Kortemme, D Baker Journal of molecular biology 322 (2), 463-476, 2002 | 113 | 2002 |
| Stress‐response balance drives the evolution of a network module and its host genome C González, JCJ Ray, M Manhart, RM Adams, D Nevozhay, AV Morozov, ... Molecular systems biology 11 (8), 827, 2015 | 108 | 2015 |
| Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster RV Chereji, TW Kan, MK Grudniewska, AV Romashchenko, E Berezikov, ... Nucleic acids research 44 (3), 1036-1051, 2016 | 102 | 2016 |
| Structure, stiffness and substates of the Dickerson-Drew dodecamer T Drsata, A Pérez, M Orozco, AV Morozov, J Sponer, F Lankas Journal of chemical theory and computation 9 (1), 707-721, 2013 | 91 | 2013 |
| Connecting protein structure with predictions of regulatory sites AV Morozov, ED Siggia Proceedings of the National Academy of Sciences 104 (17), 7068-7073, 2007 | 90 | 2007 |
| Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses N Petrenko, RV Chereji, MN McClean, AV Morozov, JR Broach Molecular biology of the cell 24 (12), 2045-2057, 2013 | 87 | 2013 |
| Potential functions for hydrogen bonds in protein structure prediction and design AV Morozov, T Kortemme Advances in protein chemistry 72, 1-38, 2005 | 87 | 2005 |
| High-throughput sequencing reveals a simple model of nucleosome energetics G Locke, D Tolkunov, Z Moqtaderi, K Struhl, AV Morozov Proceedings of the National Academy of Sciences 107 (49), 20998-21003, 2010 | 84 | 2010 |
| A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress N Elfving, RV Chereji, V Bharatula, S Björklund, AV Morozov, JR Broach Nucleic acids research 42 (9), 5468-5482, 2014 | 79 | 2014 |
| Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae KA Zawadzki, AV Morozov, JR Broach Molecular biology of the cell 20 (15), 3503-3513, 2009 | 77 | 2009 |
| Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction KMS Misura, AV Morozov, D Baker Journal of molecular biology 342 (2), 651-664, 2004 | 69 | 2004 |
| Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions RV Chereji, D Tolkunov, G Locke, AV Morozov Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 83 (5 …, 2011 | 67 | 2011 |
David BakerUniversity of Washingtonایمیل تأیید شده در uw.edu
