دنبال کردن
Özgün Babur
عنوان
نقل شده توسط
نقل شده توسط
سال
Pathway Commons, a web resource for biological pathway data‏
EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ...‏
Nucleic acids research 39 (suppl_1), D685-D690, 2010‏
13042010
Integrative analysis identifies four molecular and clinical subsets in uveal melanoma‏
AG Robertson, J Shih, C Yau, EA Gibb, J Oba, KL Mungall, JM Hess, ...‏
Cancer cell 32 (2), 204-220. e15, 2017‏
8842017
The BioPAX community standard for pathway data sharing‏
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...‏
Nature biotechnology 28 (9), 935-942, 2010‏
8042010
Integrated analysis of TP53 gene and pathway alterations in the cancer genome atlas‏
LA Donehower, T Soussi, A Korkut, Y Liu, A Schultz, M Cardenas, X Li, ...‏
Cell reports 28 (5), 1370-1384. e5, 2019‏
6042019
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution‏
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...‏
Cell 181 (2), 236-249, 2020‏
4412020
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data‏
I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ...‏
Nucleic acids research 48 (D1), D489-D497, 2020‏
3012020
A proteogenomic portrait of lung squamous cell carcinoma‏
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...‏
Cell 184 (16), 4348-4371. e40, 2021‏
2422021
Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways‏
E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ...‏
Bioinformatics 18 (7), 996-1003, 2002‏
2172002
Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations‏
Ö Babur, M Gönen, BA Aksoy, N Schultz, G Ciriello, C Sander, E Demir‏
Genome biology 16, 1-10, 2015‏
1792015
Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells‏
A Korkut, W Wang, E Demir, BA Aksoy, X Jing, EJ Molinelli, Ö Babur, ...‏
Elife 4, e04640, 2015‏
1212015
The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance‏
SK Joshi, T Nechiporuk, D Bottomly, PD Piehowski, JA Reisz, ...‏
Cancer cell 39 (7), 999-1014. e8, 2021‏
942021
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms‏
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...‏
Molecular systems biology 17 (10), e10387, 2021‏
902021
Large-scale automated machine reading discovers new cancer-driving mechanisms‏
MA Valenzuela-Escárcega, Ö Babur, G Hahn-Powell, D Bell, T Hicks, ...‏
Database 2018, bay098, 2018‏
902018
An ontology for collaborative construction and analysis of cellular pathways‏
E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ...‏
Bioinformatics 20 (3), 349-356, 2004‏
822004
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge‏
Ö Babur, A Luna, A Korkut, F Durupinar, MC Siper, U Dogrusoz, ...‏
Patterns 2 (6), 2021‏
762021
Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs‏
Ö Babur, AR Melrose, JM Cunliffe, J Klimek, J Pang, ALI Sepp, ...‏
Blood, The Journal of the American Society of Hematology 136 (20), 2346-2358, 2020‏
752020
Using biological pathway data with paxtools‏
E Demir, Ö Babur, I Rodchenkov, BA Aksoy, KI Fukuda, B Gross, ...‏
PLoS computational biology 9 (9), e1003194, 2013‏
752013
Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization‏
U Dogrusoz, EZ Erson, E Giral, E Demir, O Babur, A Cetintas, R Colak‏
Bioinformatics 22 (3), 374-375, 2006‏
752006
ChiBE: interactive visualization and manipulation of BioPAX pathway models‏
O Babur, U Dogrusoz, E Demir, C Sander‏
Bioinformatics 26 (3), 429-431, 2010‏
632010
Proteogenomic data and resources for pan-cancer analysis‏
Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ...‏
Cancer cell 41 (8), 1397-1406, 2023‏
592023
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مقاله‌ها 1–20