| Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation G Rocap, FW Larimer, J Lamerdin, S Malfatti, P Chain, NA Ahlgren, ... Nature 424 (6952), 1042-1047, 2003 | 1310 | 2003 |
| VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun Microbiome 5, 1-20, 2017 | 597 | 2017 |
| Identifying viruses from metagenomic data using deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ... Quantitative Biology 8 (1), 64-77, 2020 | 489 | 2020 |
| Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun Nucleic acids research 45 (1), 39-53, 2017 | 300 | 2017 |
| Copper toxicity and cyanobacteria ecology in the Sargasso Sea EL Mann, N Ahlgren, JW Moffett, SW Chisholm Limnology and oceanography 47 (4), 976-988, 2002 | 264 | 2002 |
| Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron JA Sohm, NA Ahlgren, ZJ Thomson, C Williams, JW Moffett, MA Saito, ... The ISME Journal 10 (2), 333-345, 2016 | 228 | 2016 |
| Culture Isolation and Culture-Independent Clone Libraries Reveal New Marine Synechococcus Ecotypes with Distinctive Light and N Physiologies NA Ahlgren, G Rocap Applied and Environmental Microbiology 72 (11), 7193-7204, 2006 | 182 | 2006 |
| Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive … NA Ahlgren, G Rocap Frontiers in Microbiology 3, 213, 2012 | 174 | 2012 |
| Aryl-homoserine lactone quorum sensing in stem-nodulating photosynthetic bradyrhizobia NA Ahlgren, CS Harwood, AL Schaefer, E Giraud, EP Greenberg Proceedings of the National Academy of Sciences 108 (17), 7183-7188, 2011 | 144 | 2011 |
| Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes NA Ahlgren, CA Fuchsman, G Rocap, JA Fuhrman The ISME journal 13 (3), 618-631, 2019 | 126 | 2019 |
| Measurement of Prochlorococcus ecotypes using real‐time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies NA Ahlgren, G Rocap, SW Chisholm Environmental microbiology 8 (3), 441-454, 2006 | 122 | 2006 |
| A network-based integrated framework for predicting virus–prokaryote interactions W Wang, J Ren, K Tang, E Dart, JC Ignacio-Espinoza, JA Fuhrman, ... NAR genomics and bioinformatics 2 (2), lqaa044, 2020 | 117 | 2020 |
| Unraveling the functional dark matter through global metagenomics GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ... Nature 622 (7983), 594-602, 2023 | 94 | 2023 |
| Long-term stability and Red Queen-like strain dynamics in marine viruses JC Ignacio-Espinoza, NA Ahlgren, JA Fuhrman Nature Microbiology 5 (2), 265-271, 2020 | 89 | 2020 |
| Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems NA Ahlgren, Y Chen, DM Needham, AE Parada, R Sachdeva, V Trinh, ... Environmental Microbiology 19 (6), 2434-2452, 2017 | 75 | 2017 |
| Multi‐year dynamics of fine‐scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom‐up factors NA Ahlgren, JN Perelman, YC Yeh, JA Fuhrman Environmental Microbiology 21 (8), 2948-2963, 2019 | 58 | 2019 |
| Prediction of virus-host infectious association by supervised learning methods M Zhang, L Yang, J Ren, NA Ahlgren, JA Fuhrman, F Sun BMC bioinformatics 18, 143-154, 2017 | 55 | 2017 |
| The unique trace metal and mixed layer conditions of the Costa Rica upwelling dome support a distinct and dense community of Synechococcus NA Ahlgren, A Noble, AP Patton, K Roache‐Johnson, L Jackson, ... Limnology and Oceanography 59 (6), 2166-2184, 2014 | 55 | 2014 |
| Optimizing de novo genome assembly from PCR-amplified metagenomes S Roux, G Trubl, D Goudeau, N Nath, E Couradeau, NA Ahlgren, Y Zhan, ... PeerJ 7, e6902, 2019 | 42 | 2019 |
| Genomic mosaicism underlies the adaptation of marine Synechococcus ecotypes to distinct oceanic iron niches NA Ahlgren, BS Belisle, MD Lee Environmental Microbiology 22 (5), 1801-1815, 2020 | 40 | 2020 |
Jed A. FuhrmanMcCulloch Crosby Chair of Marine Biology, University of Southern Californiaایمیل تأیید شده در usc.edu
