دنبال کردن
Vijay Pande
Vijay Pande
Andreessen Horowitz, Stanford University
ایمیل تأیید شده در stanford.edu - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field‏
J Lee, X Cheng, S Jo, AD MacKerell, JB Klauda, W Im‏
Biophysical journal 110 (3), 641a, 2016‏
33542016
MoleculeNet: a benchmark for molecular machine learning‏
Z Wu, B Ramsundar, EN Feinberg, J Gomes, C Geniesse, AS Pappu, ...‏
Chemical science 9 (2), 513-530, 2018‏
28642018
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics‏
P Eastman, J Swails, JD Chodera, RT McGibbon, Y Zhao, KA Beauchamp, ...‏
PLoS computational biology 13 (7), e1005659, 2017‏
22902017
MDTraj: a modern open library for the analysis of molecular dynamics trajectories‏
RT McGibbon, KA Beauchamp, MP Harrigan, C Klein, JM Swails, ...‏
Biophysical journal 109 (8), 1528-1532, 2015‏
19622015
Molecular graph convolutions: moving beyond fingerprints‏
S Kearnes, K McCloskey, M Berndl, V Pande, P Riley‏
Journal of computer-aided molecular design 30, 595-608, 2016‏
18312016
Strategies for pre-training graph neural networks‏
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec‏
arXiv preprint arXiv:1905.12265, 2019‏
15632019
Current status of the AMOEBA polarizable force field‏
JW Ponder, C Wu, P Ren, VS Pande, JD Chodera, MJ Schnieders, ...‏
The journal of physical chemistry B 114 (8), 2549-2564, 2010‏
15032010
Graph convolutional policy network for goal-directed molecular graph generation‏
J You, B Liu, Z Ying, V Pande, J Leskovec‏
Advances in neural information processing systems 31, 2018‏
11172018
Low data drug discovery with one-shot learning‏
H Altae-Tran, B Ramsundar, AS Pappu, V Pande‏
ACS central science 3 (4), 283-293, 2017‏
8952017
Absolute comparison of simulated and experimental protein-folding dynamics‏
CD Snow, H Nguyen, VS Pande, M Gruebele‏
nature 420 (6911), 102-106, 2002‏
8292002
Random-coil behavior and the dimensions of chemically unfolded proteins‏
JE Kohn, IS Millett, J Jacob, B Zagrovic, TM Dillon, N Cingel, RS Dothager, ...‏
Proceedings of the National Academy of Sciences 101 (34), 12491-12496, 2004‏
8232004
Exploring the helix-coil transition via all-atom equilibrium ensemble simulations‏
EJ Sorin, VS Pande‏
Biophysical journal 88 (4), 2472-2493, 2005‏
8152005
Everything you wanted to know about Markov State Models but were afraid to ask‏
VS Pande, K Beauchamp, GR Bowman‏
Methods 52 (1), 99-105, 2010‏
8132010
Markov state models: From an art to a science‏
BE Husic, VS Pande‏
Journal of the American Chemical Society 140 (7), 2386-2396, 2018‏
7922018
Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins‏
MR Shirts, JW Pitera, WC Swope, VS Pande‏
The Journal of chemical physics 119 (11), 5740-5761, 2003‏
7712003
Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics‏
JD Chodera, N Singhal, VS Pande, KA Dill, WC Swope‏
The Journal of chemical physics 126 (15), 2007‏
7532007
Screen savers of the world unite!‏
M Shirts, VS Pande‏
Science 290 (5498), 1903-1904, 2000‏
7362000
OpenMM 4: a reusable, extensible, hardware independent library for high performance molecular simulation‏
P Eastman, MS Friedrichs, JD Chodera, RJ Radmer, CM Bruns, JP Ku, ...‏
Journal of chemical theory and computation 9 (1), 461-469, 2013‏
7242013
Deep learning for the life sciences: applying deep learning to genomics, microscopy, drug discovery, and more‏
B Ramsundar, P Eastman, P Walters, V Pande‏
" O'Reilly Media, Inc.", 2019‏
710*2019
Accelerating molecular dynamic simulation on graphics processing units‏
MS Friedrichs, P Eastman, V Vaidyanathan, M Houston, S Legrand, ...‏
Journal of computational chemistry 30 (6), 864-872, 2009‏
6912009
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مقاله‌ها 1–20