| Systems bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches A Oulas, G Minadakis, M Zachariou, K Sokratous, MM Bourdakou, ... Briefings in bioinformatics 20 (3), 806-824, 2019 | 137 | 2019 |
| Bioinformatics methods in drug repurposing for Alzheimer’s disease JC Siavelis, MM Bourdakou, EI Athanasiadis, GM Spyrou, KS Nikita Briefings in bioinformatics 17 (2), 322-335, 2016 | 108 | 2016 |
| Discovering gene re-ranking efficiency and conserved gene-gene relationships derived from gene co-expression network analysis on breast cancer data MM Bourdakou, EI Athanasiadis, GM Spyrou Scientific reports 6 (1), 20518, 2016 | 38 | 2016 |
| Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19 M Tomazou, MM Bourdakou, G Minadakis, M Zachariou, A Oulas, ... Briefings in bioinformatics 22 (6), bbab114, 2021 | 33 | 2021 |
| Generalized linear models provide a measure of virulence for specific mutations in SARS-CoV-2 strains A Oulas, M Zanti, M Tomazou, M Zachariou, G Minadakis, MM Bourdakou, ... PloS one 16 (1), e0238665, 2021 | 33 | 2021 |
| Drug repurposing in idiopathic pulmonary fibrosis filtered by a bioinformatics-derived composite score E Karatzas, MM Bourdakou, G Kolios, GM Spyrou Scientific reports 7 (1), 12569, 2017 | 29 | 2017 |
| Aberrant microRNA expression in tumor mycosis fungoides E Papadavid, M Braoudaki, M Bourdakou, A Lykoudi, V Nikolaou, ... Tumor Biology 37, 14667-14675, 2016 | 25 | 2016 |
| A Web-based database of genetic association studies in cutaneous melanoma enhanced with network-driven data exploration tools EI Athanasiadis, K Antonopoulou, F Chatzinasiou, CM Lill, MM Bourdakou, ... Database 2014, bau101, 2014 | 19 | 2014 |
| Network-based stage-specific drug repurposing for Alzheimer’s disease K Savva, M Zachariou, MM Bourdakou, N Dietis, GM Spyrou Computational and Structural Biotechnology Journal 20, 1427-1438, 2022 | 17 | 2022 |
| Response to anti-α4β7 blockade in patients with ulcerative colitis is associated with distinct mucosal gene expression profiles at baseline M Gazouli, N Dovrolis, MM Bourdakou, M Gizis, G Kokkotis, G Kolios, ... Inflammatory Bowel Diseases 28 (1), 87-95, 2022 | 13 | 2022 |
| Drug repurposing on Alzheimer's disease through modulation of NRF2 neighborhood MM Bourdakou, R Fernández-Ginés, A Cuadrado, GM Spyrou Redox Biology 67, 102881, 2023 | 11 | 2023 |
| PathWalks: Identifying pathway communities using a disease-related map of integrated information E Karatzas, M Zachariou, MM Bourdakou, G Minadakis, A Oulas, G Kolios, ... Bioinformatics 36 (13), 4070-4079, 2020 | 9 | 2020 |
| ZoomOut: analyzing multiple networks as single nodes EI Athanasiadis, MM Bourdakou, GM Spyrou IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (5 …, 2015 | 9 | 2015 |
| D-Map: random walking on gene network inference maps towards differential avenue discovery E Athanasiadis, M Bourdakou, G Spyrou IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (2 …, 2016 | 4 | 2016 |
| Colon cancer progression is reflected to monotonic differentiation in gene expression and pathway deregulation facilitating stage–specific drug repurposing MM Bourdakou, GM Spyrou, G Kolios Cancer Genomics & Proteomics 18 (6), 757-769, 2021 | 3 | 2021 |
| Informed walks: whispering hints to gene hunters inside networks’ jungle MM Bourdakou, GM Spyrou BMC Systems Biology 11, 1-11, 2017 | 3 | 2017 |
| GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genes SV Eleftheriou, MM Bourdakou, EI Athanasiadis, GM Spyrou Database 2015, bav048, 2015 | 3 | 2015 |
| DReAmocracy: A Method to Capitalise on Prior Drug Discovery Efforts to Highlight Candidate Drugs for Repurposing K Savva, M Zachariou, MM Bourdakou, N Dietis, GM Spyrou International Journal of Molecular Sciences 25 (10), 5319, 2024 | 1 | 2024 |
| Exploring the Impact of Microgravity on Gene Expression: Dysregulated Pathways and Candidate Repurposed Drugs K Galčenko, MM Bourdakou, GM Spyrou International Journal of Molecular Sciences 26 (3), 1287, 2025 | | 2025 |
| Computational investigation of the functional landscape of the protective role that extra virgin olive oil consumption may have on chronic lymphocytic leukemia MM Bourdakou, E Melliou, P Magiatis, GM Spyrou Journal of Translational Medicine 22 (1), 869, 2024 | | 2024 |
