| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2314 | 2007 |
| Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution S Richards, Y Liu, BR Bettencourt, P Hradecky, S Letovsky, R Nielsen, ... Genome research 15 (1), 1-18, 2005 | 603 | 2005 |
| Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps SW Schaeffer, A Bhutkar, BF McAllister, M Matsuda, LM Matzkin, ... Genetics 179 (3), 1601-1655, 2008 | 265 | 2008 |
| Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes A Bhutkar, SW Schaeffer, SM Russo, M Xu, TF Smith, WM Gelbart Genetics 179 (3), 1657-1680, 2008 | 252 | 2008 |
| Natural selection and the frequency distributions of “silent” DNA polymorphism in Drosophila H Akashi, SW Schaeffer Genetics 146 (1), 295-307, 1997 | 199 | 1997 |
| Evolutionary genomics of inversions in Drosophila pseudoobscura: evidence for epistasis SW Schaeffer, MP Goetting-Minesky, M Kovacevic, JR Peoples, ... Proceedings of the National Academy of Sciences 100 (14), 8319-8324, 2003 | 142 | 2003 |
| Phylogeny and biogeography of deep sea vestimentiferan tubeworms and their bacterial symbionts ER Mcmullin, S Hourdez, SW Schaeffer, CR Fisher Symbiosis 34 (1), 1-41, 2003 | 130 | 2003 |
| Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions MAF Noor, DA Garfield, SW Schaeffer, CA Machado Genetics 177 (3), 1417-1428, 2007 | 124 | 2007 |
| S-allele sequence diversity in natural populations of Solanum carolinense (Horsenettle) AD Richman, TH Kao, SW Schaeffer, MK Uyenoyama Heredity 75 (4), 405-415, 1995 | 120 | 1995 |
| Estimates of linkage disequilibrium and the recombination parameter determined from segregating nucleotide sites in the alcohol dehydrogenase region of Drosophila pseudoobscura. SW Schaeffer, EL Miller Genetics 135 (2), 541-552, 1993 | 115 | 1993 |
| Molecular evolution of inversions in Drosophila pseudoobscura: the amylase gene region. CF Aquadro, AL Weaver, SW Schaeffer, WW Anderson Proceedings of the National Academy of Sciences 88 (1), 305-309, 1991 | 112 | 1991 |
| Tubeworm succession at hydrothermal vents: use of biogenic cues to reduce habitat selection error? LS Mullineaux, CR Fisher, CH Peterson, SW Schaeffer Oecologia 123, 275-284, 2000 | 111 | 2000 |
| Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin JF Flores, CR Fisher, SL Carney, BN Green, JK Freytag, SW Schaeffer, ... Proceedings of the National Academy of Sciences 102 (8), 2713-2718, 2005 | 106 | 2005 |
| Nucleotide Sequence of the Adh Gene Region of Drosophila pseudoobscura: Evolutionary Change and Evidence for an Ancient Gene Duplication SW Schaeffer, CF Aquadro Genetics 117 (1), 61-73, 1987 | 105 | 1987 |
| Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila HE Machado, AO Bergland, R Taylor, S Tilk, E Behrman, K Dyer, ... Elife 10, e67577, 2021 | 101 | 2021 |
| Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura SW Schaeffer, WW Anderson Genetics 171 (4), 1729-1739, 2005 | 90 | 2005 |
| Ancestral polymorphisms explain the role of chromosomal inversions in speciation ZL Fuller, CJ Leonard, RE Young, SW Schaeffer, N Phadnis PLoS genetics 14 (7), e1007526, 2018 | 87 | 2018 |
| Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura SW Schaeffer Genetics Research 80 (3), 163-175, 2002 | 85 | 2002 |
| How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis ZL Fuller, SA Koury, N Phadnis, SW Schaeffer Molecular ecology 28 (6), 1283-1301, 2019 | 83 | 2019 |
| Nucleotide sequence analysis of Adh genes estimates the time of geographic isolation of the Bogota population of Drosophila pseudoobscura. SW Schaeffer, EL Miller Proceedings of the National Academy of Sciences 88 (14), 6097-6101, 1991 | 78 | 1991 |
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