| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007 | 6106 | 2007 |
| Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome ND Heintzman, RK Stuart, G Hon, Y Fu, CW Ching, RD Hawkins, ... Nature genetics 39 (3), 311-318, 2007 | 4063 | 2007 |
| Histone modifications at human enhancers reflect global cell-type-specific gene expression ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ... Nature 459 (7243), 108-112, 2009 | 2990 | 2009 |
| Cyanobacterial reuse of extracellular organic carbon in microbial mats RK Stuart, X Mayali, JZ Lee, RC Everroad, M Hwang, BM Bebout, ... The ISME Journal, 2015 | 141 | 2015 |
| Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis D Warshan, JL Espinoza, RK Stuart, RA Richter, SY Kim, N Shapiro, ... The ISME journal 11 (12), 2821-2833, 2017 | 87 | 2017 |
| Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains RK Stuart, CL Dupont, DA Johnson, IT Paulsen, B Palenik Applied and environmental microbiology 75 (15), 5047-5057, 2009 | 79 | 2009 |
| Genome-wide mapping of allele-specific protein-DNA interactions in human cells ND Maynard, J Chen, RK Stuart, JB Fan, B Ren Nature Methods 5 (4), 307-309, 2008 | 70 | 2008 |
| Pervasive iron limitation at subsurface chlorophyll maxima of the California Current SL Hogle, CL Dupont, BM Hopkinson, AL King, KN Buck, KL Roe, ... Proceedings of the National Academy of Sciences 115 (52), 13300-13305, 2018 | 62 | 2018 |
| Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress RK Stuart, B Brahamsha, K Busby, B Palenik The ISME journal 7 (6), 1139-1149, 2013 | 53 | 2013 |
| Plant-associated fungi support bacterial resilience following water limitation R Hestrin, M Kan, M Lafler, J Wollard, JA Kimbrel, P Ray, SJ Blazewicz, ... The ISME Journal, 1-11, 2022 | 44 | 2022 |
| Selective collection of iron-rich dust particles by natural Trichodesmium colonies N Kessler, R Armoza-Zvuloni, S Wang, S Basu, PK Weber, RK Stuart, ... The ISME journal 14 (1), 91-103, 2020 | 40 | 2020 |
| A microarray for assessing transcription from pelagic marine microbial taxa IN Shilova, JC Robidart, HJ Tripp, K Turk-Kubo, B Wawrik, AF Post, ... The ISME journal 8 (7), 1476-1491, 2014 | 33 | 2014 |
| Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm RK Stuart, X Mayali, AA Boaro, A Zemla, RC Everroad, D Nilson, ... mBio 7 (3), e00650-16, 2016 | 31 | 2016 |
| Bidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism RK Stuart, ERA Pederson, PD Weyman, PK Weber, U Rassmussen, ... The ISME journal 14 (12), 3068-3078, 2020 | 30 | 2020 |
| Reaction of O2 with a diiron protein generates a mixed-valent Fe2+/Fe3+ center and peroxide JM Bradley, DA Svistunenko, J Pullin, N Hill, RK Stuart, B Palenik, ... Proceedings of the National Academy of Sciences 116 (6), 2058-2067, 2019 | 30 | 2019 |
| Bacterial communities protect the alga Microchloropsis salina from grazing by the rotifer Brachionus plicatilis CL Fisher, CS Ward, PD Lane, JA Kimbrel, KL Sale, RK Stuart, X Mayali, ... Algal Research 40, 101500, 2019 | 26 | 2019 |
| Identification of effector metabolites using exometabolite profiling of diverse microalgae V Brisson, X Mayali, B Bowen, A Golini, M Thelen, RK Stuart, TR Northen Msystems 6 (6), e00835-21, 2021 | 23 | 2021 |
| Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species SG Tetu, DA Johnson, DR Varkey, K Phillippy, RK Stuart, C Dupont, ... Frontiers in microbiology 4, 232, 2013 | 22 | 2013 |
| Computational prediction of the osmoregulation network in Synechococcus sp. WH8102 X Mao, V Olman, R Stuart, IT Paulsen, B Palenik, Y Xu BMC genomics 11 (1), 1-15, 2010 | 21 | 2010 |
| Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum X Mayali, TJ Samo, JA Kimbrel, MM Morris, K Rolison, C Swink, C Ramon, ... Nature Communications 14 (1), 5642, 2023 | 18* | 2023 |
