دنبال کردن
Carlos Simmerling
Carlos Simmerling
Marsha Laufer Chair in Physical & Quantitative Biology, SUNY Stony Brook
ایمیل تأیید شده در stonybrook.edu - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
The Amber biomolecular simulation programs‏
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...‏
Journal of computational chemistry 26 (16), 1668-1688, 2005‏
105422005
ff14SB: improving the accuracy of protein side chain and backbone parameters from ff99SB‏
JA Maier, C Martinez, K Kasavajhala, L Wickstrom, KE Hauser, ...‏
Journal of chemical theory and computation 11 (8), 3696-3713, 2015‏
94322015
Amber 11‏
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...‏
University of California, 2010‏
86032010
Comparison of multiple Amber force fields and development of improved protein backbone parameters‏
V Hornak, R Abel, A Okur, B Strockbine, A Roitberg, C Simmerling‏
Proteins: Structure, Function, and Bioinformatics 65 (3), 712-725, 2006‏
75622006
Amber 2021‏
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...‏
University of California, San Francisco, 2021‏
57372021
AMBER 9‏
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...‏
University of California, San Francisco 45, 2006‏
36832006
ff19SB: amino-acid-specific protein backbone parameters trained against quantum mechanics energy surfaces in solution‏
C Tian, K Kasavajhala, KAA Belfon, L Raguette, H Huang, AN Migues, ...‏
Journal of chemical theory and computation 16 (1), 528-552, 2019‏
13582019
All-atom structure prediction and folding simulations of a stable protein‏
C Simmerling, B Strockbine, AE Roitberg‏
Journal of the American Chemical Society 124 (38), 11258-11259, 2002‏
7252002
AMBER 8, University of California, San Francisco‏
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...‏
There is no corresponding record for this reference, 2004‏
616*2004
Amber 10‏
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...‏
University of California, 2008‏
534*2008
Improved generalized born solvent model parameters for protein simulations‏
H Nguyen, DR Roe, C Simmerling‏
Journal of chemical theory and computation 9 (4), 2020-2034, 2013‏
5012013
Generalized Born model with a simple, robust molecular volume correction‏
J Mongan, C Simmerling, JA McCammon, DA Case, A Onufriev‏
Journal of chemical theory and computation 3 (1), 156-169, 2007‏
4532007
HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations‏
V Hornak, A Okur, RC Rizzo, C Simmerling‏
Proceedings of the National Academy of Sciences 103 (4), 915-920, 2006‏
4462006
AmberTools‏
DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ...‏
Journal of chemical information and modeling 63 (20), 6183-6191, 2023‏
4302023
Amber 14‏
DA Case, V Babin, J Berryman, RM Betz, Q Cai, DS Cerutti, ...‏
University of California, 2014‏
394*2014
AMBER 5.0‏
DA Case, DA Pearlman, JW Caldwell, TE Cheatham III, WS Ross, ...‏
University of California, San Francisco, 1997‏
3521997
Three-dimensional molecular theory of solvation coupled with molecular dynamics in Amber‏
T Luchko, S Gusarov, DR Roe, C Simmerling, DA Case, J Tuszynski, ...‏
Journal of chemical theory and computation 6 (3), 607-624, 2010‏
2942010
Evaluating the performance of the ff99SB force field based on NMR scalar coupling data‏
L Wickstrom, A Okur, C Simmerling‏
Biophysical journal 97 (3), 853-856, 2009‏
2622009
Folding simulations for proteins with diverse topologies are accessible in days with a physics-based force field and implicit solvent‏
H Nguyen, J Maier, H Huang, V Perrone, C Simmerling‏
Journal of the American Chemical Society 136 (40), 13959-13962, 2014‏
2522014
AMBER 14; University of California: San Francisco, 2014‏
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...‏
There is no corresponding record for this reference, 1-826, 2014‏
2492014
سیستم در حال حاضر قادر به انجام عملکرد نیست. بعداً دوباره امتحان کنید.
مقاله‌ها 1–20