دنبال کردن
Jonathan Barnoud
Jonathan Barnoud
Centro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS) Universidade de Santiago de
ایمیل تأیید شده در usc.es
عنوان
نقل شده توسط
نقل شده توسط
سال
MDAnalysis: a Python package for the rapid analysis of molecular dynamics simulations
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2019
13832019
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
8432021
Polystyrene nanoparticles perturb lipid membranes
G Rossi, J Barnoud, L Monticelli
The journal of physical chemistry letters 5 (1), 241-246, 2014
3712014
Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers
N Castillo, L Monticelli, J Barnoud, DP Tieleman
Chemistry and physics of lipids 169, 95-105, 2013
1402013
A coarse-grained MARTINI model of polyethylene glycol and of polyoxyethylene alkyl ether surfactants
G Rossi, PFJ Fuchs, J Barnoud, L Monticelli
The Journal of Physical Chemistry B 116 (49), 14353-14362, 2012
1272012
Martini 3 coarse‐grained force field: small molecules
R Alessandri, J Barnoud, AS Gertsen, I Patmanidis, AH de Vries, ...
Advanced Theory and Simulations 5 (1), 2100391, 2022
1072022
Protein flexibility in the light of structural alphabets
P Craveur, AP Joseph, J Esque, TJ Narwani, F Noël, N Shinada, ...
Frontiers in molecular biosciences 2, 20, 2015
982015
Hydrophobic compounds reshape membrane domains
J Barnoud, G Rossi, SJ Marrink, L Monticelli
PLoS Computational Biology 10 (10), e1003873, 2014
822014
Lipid membranes as solvents for carbon nanoparticles
J Barnoud, G Rossi, L Monticelli
Physical Review Letters 112 (6), 068102, 2014
792014
Titratable Martini model for constant pH simulations
F Grünewald, PCT Souza, H Abdizadeh, J Barnoud, AH de Vries, ...
The Journal of chemical physics 153 (2), 2020
722020
Piezo1 forms specific, functionally important interactions with phosphoinositides and cholesterol
A Buyan, CD Cox, J Barnoud, J Li, HSM Chan, B Martinac, SJ Marrink, ...
Biophysical journal 119 (8), 1683-1697, 2020
712020
Proceedings of the 15th python in science conference
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Austin, TX, 2016
712016
Martinize2 and vermouth: Unified framework for topology generation
PC Kroon, F Grünewald, J Barnoud, M van Tilburg, PCT Souza, ...
arXiv preprint arXiv:2212.01191, 2022
612022
Capturing choline–aromatics cation− π interactions in the MARTINI force field
HM Khan, PCT Souza, S Thallmair, J Barnoud, AH De Vries, SJ Marrink, ...
Journal of chemical theory and computation 16 (4), 2550-2560, 2020
512020
Interactive molecular dynamics in virtual reality is an effective tool for flexible substrate and inhibitor docking to the SARS-CoV-2 main protease
HM Deeks, RK Walters, J Barnoud, DR Glowacki, AJ Mulholland
Journal of chemical information and modeling 60 (12), 5803-5814, 2020
472020
PBxplore: a tool to analyze local protein structure and deformability with Protein Blocks
J Barnoud, H Santuz, P Craveur, AP Joseph, V Jallu, AG de Brevern, ...
PeerJ 5, e4013, 2017
382017
Resolving donor–acceptor interfaces and charge carrier energy levels of organic semiconductors with polar side chains
R Alessandri, S Sami, J Barnoud, AH de Vries, SJ Marrink, RWA Havenith
Advanced Functional Materials 30 (46), 2004799, 2020
362020
Sharing data from molecular simulations
M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ...
Journal of chemical information and modeling 59 (10), 4093-4099, 2019
362019
C60 fullerene promotes lung monolayer collapse
J Barnoud, L Urbini, L Monticelli
Journal of The Royal Society Interface 12 (104), 20140931, 2015
352015
Alcohol interactions with lipid bilayers
T Kondela, J Gallová, T Hauß, J Barnoud, SJ Marrink, N Kučerka
Molecules 22 (12), 2078, 2017
342017
سیستم در حال حاضر قادر به انجام عملکرد نیست. بعداً دوباره امتحان کنید.
مقاله‌ها 1–20