| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 2266 | 2021 |
| Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 2016 | 2014 |
| One thousand plant transcriptomes and the phylogenomics of green plants. J Leebens-Mack Nature 574, 679-685, 2019 | 1468* | 2019 |
| Phylotranscriptomic analysis of the origin and early diversification of land plants NJ Wickett, S Mirarab, N Nguyen, T Warnow, E Carpenter, N Matasci, ... Proceedings of the National Academy of Sciences 111 (45), E4859-E4868, 2014 | 1309 | 2014 |
| ASTRAL: genome-scale coalescent-based species tree estimation S Mirarab, R Reaz, MS Bayzid, T Zimmermann, MS Swenson, T Warnow Bioinformatics 30 (17), i541-i548, 2014 | 1265 | 2014 |
| ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes S Mirarab, T Warnow Bioinformatics 31 (12), i44-i52, 2015 | 957 | 2015 |
| Chemical phylogenetics of histone deacetylases JE Bradner, N West, ML Grachan, EF Greenberg, SJ Haggarty, T Warnow, ... Nature chemical biology 6 (3), 238-243, 2010 | 868 | 2010 |
| Data access for the 1,000 Plants (1KP) project N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ... Gigascience 3 (1), 2047-217X-3-17, 2014 | 606 | 2014 |
| PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences S Mirarab, N Nguyen, S Guo, LS Wang, J Kim, T Warnow Journal of Computational Biology 22 (5), 377-386, 2015 | 514* | 2015 |
| Indo‐European and computational cladistics D Ringe, T Warnow, A Taylor Transactions of the philological society 100 (1), 59-129, 2002 | 489 | 2002 |
| Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees K Liu, S Raghavan, S Nelesen, CR Linder, T Warnow Science 324 (5934), 1561-1564, 2009 | 449 | 2009 |
| The CIPRES portals MA Miller, MT Holder, R Vos, PE Midford, T Liebowitz, L Chan, P Hoover, ... Cipres, 2009 | 425 | 2009 |
| SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ... Systematic biology 61 (1), 90, 2012 | 416 | 2012 |
| A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity NP Nguyen, T Warnow, M Pop, B White NPJ biofilms and microbiomes 2 (1), 1-8, 2016 | 342 | 2016 |
| Perfect phylogenetic networks: A new methodology for reconstructing the evolutionary history of natural languages L Nakhleh, DA Ringe, T Warnow Language 81 (2), 382-420, 2005 | 303 | 2005 |
| Two strikes against perfect phylogeny HL Bodlaender, MR Fellows, TJ Warnow International colloquium on automata, languages, and programming, 273-283, 1992 | 299 | 1992 |
| Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting S Mirarab, MS Bayzid, T Warnow Systematic Biology 65 (3), 366-380, 2016 | 297 | 2016 |
| SEPP: SATé-enabled phylogenetic placement S Mirarab, N Nguyen, T Warnow Biocomputing 2012, 247-258, 2012 | 277 | 2012 |
| RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation K Liu, CR Linder, T Warnow PloS one 6 (11), e27731, 2011 | 276 | 2011 |
| Statistical binning enables an accurate coalescent-based estimation of the avian tree S Mirarab, MS Bayzid, B Boussau, T Warnow Science 346 (6215), 1250463, 2014 | 267 | 2014 |
