دسترسی عمومی

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis‏

R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...‏

PLoS computational biology 15 (4), e1006650, 2019‏

تعهدات: Swiss National Science Foundation, US National Institutes of Health‏

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals‏

R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ...‏

PloS one 6 (1), e15925, 2011‏

تعهدات: Austrian Science Fund‏

[HTML] nature.com

Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic‏

Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...‏

Nature genetics 53 (6), 809-816, 2021‏

تعهدات: US National Institutes of Health, Australian Research Council, European …‏

[PDF] asm.org

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131‏

N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...‏

MBio 7 (2), 10.1128/mbio. 02162-15, 2016‏

تعهدات: US National Institutes of Health, US Department of Veterans Affairs …‏

[HTML] microbiologyresearch.org

New routes to phylogeography: a Bayesian structured coalescent approximation‏

N De Maio, CH Wu, KM O’Reilly, D Wilson‏

PLoS genetics 11 (8), e1005421, 2015‏

تعهدات: UK Medical Research Council, Wellcome Trust‏

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes‏

N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...‏

Microbial genomics 5 (9), e000294, 2019‏

تعهدات: UK Natural Environment Research Council, National Institute for Health …‏

SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent‏

N De Maio, CH Wu, DJ Wilson‏

PLoS computational biology 12 (9), e1005130, 2016‏

تعهدات: Wellcome Trust‏

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines‏

SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ...‏

Gigascience 9 (2), giaa007, 2020‏

تعهدات: UK Biotechnology and Biological Sciences Research Council, National …‏

Mutation rates and selection on synonymous mutations in SARS-CoV-2‏

N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, ...‏

Genome biology and evolution 13 (5), evab087, 2021‏

تعهدات: US National Institutes of Health, Australian Research Council, European …‏

Stability of SARS-CoV-2 phylogenies‏

Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...‏

PLoS genetics 16 (11), e1009175, 2020‏

تعهدات: US National Institutes of Health, European Molecular Biology Laboratory, UK …‏

[HTML] wiley.com

VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER‏

P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt‏

Evolution 67 (12), 3573-3587, 2013‏

تعهدات: Swiss National Science Foundation, Austrian Science Fund‏

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome …‏

J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ...‏

Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017‏

تعهدات: US National Institutes of Health, National Institute for Health Research, UK‏

[PDF] elifesciences.org

Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system‏

J Crispell, CH Benton, D Balaz, N De Maio, A Ahkmetova, A Allen, R Biek, ...‏

elife 8, e45833, 2019‏

تعهدات: Science Foundation Ireland, UK Biotechnology and Biological Sciences …‏

[HTML] nature.com

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape‏

Y Turakhia, B Thornlow, A Hinrichs, J McBroome, N Ayala, C Ye, K Smith, ...‏

Nature 609 (7929), 994-997, 2022‏

تعهدات: US National Institutes of Health, Australian Research Council, European …‏

[HTML] nature.com

Genomic reconstruction of the SARS-CoV-2 epidemic in England‏

HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, ...‏

Nature 600 (7889), 506-511, 2021‏

تعهدات: Cancer Research UK, UK Medical Research Council, National Institute for …‏

[PDF] springer.com

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples‏

HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ...‏

Environmental Microbiome 14 (1), 1-15, 2019‏

تعهدات: UK Natural Environment Research Council, National Institute for Health …‏

[HTML] oup.com

A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages‏

S Dellicour, K Durkin, SL Hong, B Vanmechelen, J Martí-Carreras, MS Gill, ...‏

Molecular biology and evolution 38 (4), 1608-1613, 2021‏

تعهدات: National Fund for Scientific Research, Belgium, Research Foundation …‏

PoMo: an allele frequency-based approach for species tree estimation‏

N De Maio, D Schrempf, C Kosiol‏

Systematic biology 64 (6), 1018-1031, 2015‏

تعهدات: Austrian Science Fund‏

[HTML] oup.com

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees‏

J McBroome, B Thornlow, AS Hinrichs, A Kramer, N De Maio, N Goldman, ...‏

Molecular biology and evolution 38 (12), 5819-5824, 2021‏

تعهدات: US National Institutes of Health, European Molecular Biology Laboratory‏

[PDF] plos.org