| Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences J Goecks, A Nekrutenko, J Taylor, Galaxy Team team@ galaxyproject. org Genome biology 11, 1-13, 2010 | 4269 | 2010 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 3949 | 2018 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2608 | 2005 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016 | 2144 | 2016 |
| Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010 | 1803 | 2010 |
| Ten simple rules for reproducible computational research GK Sandve, A Nekrutenko, J Taylor, E Hovig PLoS computational biology 9 (10), e1003285, 2013 | 858 | 2013 |
| Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010 | 819 | 2010 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 480 | 2020 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 382 | 2022 |
| Next-generation sequencing data interpretation: enhancing reproducibility and accessibility A Nekrutenko, J Taylor Nature Reviews Genetics 13 (9), 667-672, 2012 | 370 | 2012 |
| Dissemination of scientific software with Galaxy ToolShed D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ... Genome biology 15 (2), 1-3, 2014 | 274 | 2014 |
| NCBI BLAST+ integrated into Galaxy PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo Gigascience 4 (1), s13742-015-0080-7, 2015 | 249 | 2015 |
| Galaxy CloudMan: delivering cloud compute clusters E Afgan, D Baker, N Coraor, B Chapman, A Nekrutenko, J Taylor BMC bioinformatics 11 (12), 1-6, 2010 | 223 | 2010 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 200 | 2018 |
| Multi-omic data analysis using Galaxy J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ... Nature biotechnology 33 (2), 137-139, 2015 | 168 | 2015 |
| Practical computational reproducibility in the life sciences B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ... Cell systems 6 (6), 631-635, 2018 | 150 | 2018 |
| Harnessing cloud computing with Galaxy Cloud E Afgan, D Baker, N Coraor, H Goto, IM Paul, KD Makova, A Nekrutenko, ... Nature biotechnology 29 (11), 972-974, 2011 | 142 | 2011 |
| Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study H Goto, B Dickins, E Afgan, IM Paul, J Taylor, KD Makova, A Nekrutenko Genome biology 12 (6), 1-16, 2011 | 117 | 2011 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 108 | 2022 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ... BMC genomics 15, 1-9, 2014 | 105 | 2014 |