دنبال کردن
JA Izaguirre
عنوان
نقل شده توسط
نقل شده توسط
سال
Langevin stabilization of molecular dynamics‏
JA Izaguirre, DP Catarello, JM Wozniak, RD Skeel‏
The Journal of chemical physics 114 (5), 2090-2098, 2001‏
11272001
CompuCell, a multi-model framework for simulation of morphogenesis‏
JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ...‏
Bioinformatics 20 (7), 1129-1137, 2004‏
2902004
Longer time steps for molecular dynamics‏
JA Izaguirre, S Reich, RD Skeel‏
The Journal of chemical physics 110 (20), 9853-9864, 1999‏
2481999
An impulse integrator for Langevin dynamics‏
RD Skeel, JA Izaguirre‏
Molecular Physics 100 (24), 3885-3891, 2002‏
1852002
A framework for three-dimensional simulation of morphogenesis‏
TM Cickovski, C Huang, R Chaturvedi, T Glimm, HGE Hentschel, ...‏
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 273-288, 2005‏
1682005
On multiscale approaches to three-dimensional modelling of morphogenesis‏
R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, ...‏
Journal of the Royal Society interface 2 (3), 237-253, 2005‏
1592005
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis‏
N Chen, JA Glazier, JA Izaguirre, MS Alber‏
Computer physics communications 176 (11-12), 670-681, 2007‏
1432007
ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics‏
T Matthey, T Cickovski, S Hampton, A Ko, Q Ma, M Nyerges, T Raeder, ...‏
ACM Transactions on Mathematical Software (TOMS) 30 (3), 237-265, 2004‏
1372004
Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules‏
JA Izaguirre, SS Hampton‏
Journal of Computational Physics 200 (2), 581-604, 2004‏
1262004
Work queue+ python: A framework for scalable scientific ensemble applications‏
P Bui, D Rajan, B Abdul-Wahid, J Izaguirre, D Thain‏
Workshop on python for high performance and scientific computing at sc11, 2011‏
1202011
Verlet-I/r-RESPA/Impulse is limited by nonlinear instabilities‏
Q Ma, JA Izaguirre, RD Skeel‏
SIAM Journal on Scientific Computing 24 (6), 1951-1973, 2003‏
1182003
Predicting protein-protein interactions from protein domains using a set cover approach‏
C Huang, F Morcos, SP Kanaan, S Wuchty, DZ Chen, JA Izaguirre‏
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 78-87, 2007‏
942007
Modeling conformational ensembles of slow functional motions in Pin1-WW‏
F Morcos, S Chatterjee, CL McClendon, PR Brenner, R López-Rendón, ...‏
PLoS computational biology 6 (12), e1001015, 2010‏
892010
From genes to organisms via the cell: a problem-solving environment for multicellular development‏
T Cickovski, K Aras, M Swat, RMH Merks, T Glimm, HGE Hentschel, ...‏
Computing in science & engineering 9 (4), 50-60, 2007‏
772007
Converting a high performance application to an elastic cloud application‏
D Rajan, A Canino, JA Izaguirre, D Thain‏
2011 IEEE Third International Conference on Cloud Computing Technology and …, 2011‏
732011
Multiscale dynamics of macromolecules using normal mode Langevin‏
JA Izaguirre, CR Sweet, VS Pande‏
Biocomputing 2010, 240-251, 2010‏
692010
Accelerating the replica exchange method through an efficient all-pairs exchange‏
P Brenner, CR Sweet, D VonHandorf, JA Izaguirre‏
The Journal of chemical physics 126 (7), 2007‏
682007
BioCoRE: a collaboratory for structural biology‏
M Bhandarkar, G Budescu, WF Humphrey, JA Izaguirre, S Izrailev, ...‏
Simulation Series 31, 242-251, 1999‏
621999
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry‏
T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ...‏
Nature communications 13 (1), 5884, 2022‏
562022
Parallel multigrid summation for the N-body problem‏
JA Izaguirre, SS Hampton, T Matthey‏
Journal of Parallel and Distributed Computing 65 (8), 949-962, 2005‏
562005
سیستم در حال حاضر قادر به انجام عملکرد نیست. بعداً دوباره امتحان کنید.
مقاله‌ها 1–20