| Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial C Ludwig, L Gillet, G Rosenberger, S Amon, BC Collins, R Aebersold Molecular systems biology 14 (8), e8126, 2018 | 973 | 2018 |
| OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ... Nature biotechnology 32 (3), 219-223, 2014 | 841 | 2014 |
| OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016 | 678 | 2016 |
| Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry BC Collins, CL Hunter, Y Liu, B Schilling, G Rosenberger, SL Bader, ... Nature communications 8 (1), 291, 2017 | 567 | 2017 |
| A repository of assays to quantify 10,000 human proteins by SWATH-MS G Rosenberger, CC Koh, T Guo, HL Röst, P Kouvonen, BC Collins, ... Scientific data 1 (1), 1-15, 2014 | 450 | 2014 |
| Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski, HL Röst, ... Nature medicine 21 (4), 407-413, 2015 | 390 | 2015 |
| Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system BC Collins, LC Gillet, G Rosenberger, HL Röst, A Vichalkovski, ... Nature methods 10 (12), 1246-1253, 2013 | 368 | 2013 |
| Building high-quality assay libraries for targeted analysis of SWATH MS data OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ... Nature protocols 10 (3), 426-441, 2015 | 360 | 2015 |
| A multicenter study benchmarks software tools for label-free proteome quantification P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ... Nature biotechnology 34 (11), 1130-1136, 2016 | 346 | 2016 |
| Quantitative proteomics: challenges and opportunities in basic and applied research OT Schubert, HL Röst, BC Collins, G Rosenberger, R Aebersold Nature protocols 12 (7), 1289-1294, 2017 | 311 | 2017 |
| Absolute proteome composition and dynamics during dormancy and resuscitation of Mycobacterium tuberculosis OT Schubert, C Ludwig, M Kogadeeva, M Zimmermann, G Rosenberger, ... Cell host & microbe 18 (1), 96-108, 2015 | 232 | 2015 |
| Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ... Nature methods 14 (9), 921-927, 2017 | 223 | 2017 |
| The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis OT Schubert, J Mouritsen, C Ludwig, HL Röst, G Rosenberger, PK Arthur, ... Cell host & microbe 13 (5), 602-612, 2013 | 211 | 2013 |
| dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts V Demichev, L Szyrwiel, F Yu, GC Teo, G Rosenberger, A Niewienda, ... Nature communications 13 (1), 3944, 2022 | 204 | 2022 |
| TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics HL Röst, Y Liu, G D'Agostino, M Zanella, P Navarro, G Rosenberger, ... Nature methods 13 (9), 777-783, 2016 | 191 | 2016 |
| Cross-link guided molecular modeling with ROSETTA A Kahraman, F Herzog, A Leitner, G Rosenberger, R Aebersold, ... PloS one 8 (9), e73411, 2013 | 183 | 2013 |
| Complex‐centric proteome profiling by SEC‐SWATH‐MS M Heusel, I Bludau, G Rosenberger, R Hafen, M Frank, ... Molecular systems biology 15 (1), e8438, 2019 | 152 | 2019 |
| Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS G Rosenberger, Y Liu, HL Röst, C Ludwig, A Buil, A Bensimon, M Soste, ... Nature biotechnology 35 (8), 781-788, 2017 | 139 | 2017 |
| DIANA—algorithmic improvements for analysis of data-independent acquisition MS data J Teleman, HL Röst, G Rosenberger, U Schmitt, L Malmström, ... Bioinformatics 31 (4), 555-562, 2015 | 120 | 2015 |
| N-α-acetyltransferase 10 protein suppresses cancer cell metastasis by binding PIX proteins and inhibiting Cdc42/Rac1 activity KT Hua, CT Tan, G Johansson, JM Lee, PW Yang, HY Lu, CK Chen, ... Cancer cell 19 (2), 218-231, 2011 | 114 | 2011 |
