| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2568 | 2004 |
| A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010 | 860 | 2010 |
| iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), 2011 | 617 | 2011 |
| Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015 | 350 | 2015 |
| Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ... Cell 166 (3), 766-778, 2016 | 338 | 2016 |
| 组织与管理研究的实证方法 陈晓萍 | 281 | 2008 |
| Combining results of multiple search engines in proteomics D Shteynberg, AI Nesvizhskii, RL Moritz, EW Deutsch Molecular & Cellular Proteomics 12 (9), 2383-2393, 2013 | 221 | 2013 |
| Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ... Molecular & cellular proteomics 12 (8), 2148-2159, 2013 | 211 | 2013 |
| State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human Proteome Project T Farrah, EW Deutsch, GS Omenn, Z Sun, JD Watts, T Yamamoto, ... Journal of proteome research 13 (1), 60-75, 2014 | 149 | 2014 |
| PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ... Journal of proteome research 18 (12), 4262-4272, 2019 | 111 | 2019 |
| Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis J Malmström, H Lee, AI Nesvizhskii, D Shteynberg, S Mohanty, E Brunner, ... Journal of proteome research 5 (9), 2241-2249, 2006 | 102 | 2006 |
| MaRiMba: a software application for spectral library-based MRM transition list assembly CA Sherwood, A Eastham, LW Lee, A Peterson, JK Eng, D Shteynberg, ... Journal of proteome research 8 (10), 4396-4405, 2009 | 85 | 2009 |
| State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ... Journal of proteome research 14 (9), 3461-3473, 2015 | 77 | 2015 |
| Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non … K Surmann, S Michalik, P Hildebrandt, P Gierok, M Depke, L Brinkmann, ... Frontiers in microbiology 5, 392, 2014 | 57 | 2014 |
| Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline A Keller, D Shteynberg Bioinformatics for comparative proteomics, 169-189, 2011 | 52 | 2011 |
| Trans-proteomic pipeline: robust mass spectrometry-based proteomics data analysis suite EW Deutsch, L Mendoza, DD Shteynberg, MR Hoopmann, Z Sun, JK Eng, ... Journal of proteome research 22 (2), 615-624, 2023 | 50 | 2023 |
| Identification of rat genes by TWINSCAN gene prediction, RT–PCR, and direct sequencing JQ Wu, D Shteynberg, M Arumugam, RA Gibbs, MR Brent Genome Research 14 (4), 665-671, 2004 | 49 | 2004 |
| Opening a SWATH window on posttranslational modifications: automated pursuit of modified peptides A Keller, SL Bader, U Kusebauch, D Shteynberg, L Hood, RL Moritz Molecular & Cellular Proteomics 15 (3), 1151-1163, 2016 | 46 | 2016 |
| Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction RA Saleem, RS Rogers, AV Ratushny, DJ Dilworth, PT Shannon, ... Molecular & Cellular Proteomics 9 (9), 2076-2088, 2010 | 46 | 2010 |
| Gene finding in the chicken genome E Eyras, A Reymond, R Castelo, JM Bye, F Camara, P Flicek, EJ Huckle, ... BMC bioinformatics 6, 1-12, 2005 | 44 | 2005 |
