| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011 | 3821 | 2011 |
| MUMmer4: A fast and versatile genome alignment system G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin PLoS computational biology 14 (1), e1005944, 2018 | 1704 | 2018 |
| The MaSuRCA genome assembler AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke Bioinformatics 29 (21), 2669-2677, 2013 | 1450 | 2013 |
| A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10 (4), R42, 2009 | 1379 | 2009 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 898 | 2012 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 898 | 2012 |
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ... Genome Biology 15 (3), R59, 2014 | 558 | 2014 |
| Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ... PLoS biology 8 (9), e1000475, 2010 | 475 | 2010 |
| Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ... Genome Research 27 (5), 787-792, 2017 | 424 | 2017 |
| Sequencing and assembly of the 22-Gb loblolly pine genome A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ... Genetics 196 (3), 875-890, 2014 | 396 | 2014 |
| Sequence of the Sugar Pine Megagenome KA Stevens, JL Wegrzyn, A Zimin, D Puiu, M Crepeau, C Cardeno, R Paul, ... Genetics 204 (4), 1613-1626, 2016 | 204 | 2016 |
| A new rhesus macaque assembly and annotation for next-generation sequencing analyses AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ... Biology direct 9 (1), 20, 2014 | 188 | 2014 |
| QuorUM: an error corrector for Illumina reads G Marçais, JA Yorke, A Zimin PloS one 10 (6), e0130821, 2015 | 100 | 2015 |
| Locality-sensitive hashing for the edit distance G Marçais, D DeBlasio, P Pandey, C Kingsford Bioinformatics 35 (14), i127-i135, 2019 | 80 | 2019 |
| Improving the performance of minimizers and winnowing schemes G Marçais, D Pellow, D Bork, Y Orenstein, R Shamir, C Kingsford Bioinformatics 33 (14), i110-i117, 2017 | 75 | 2017 |
| Jellyfish: A fast k-mer counter G Marcais, C Kingsford | 70 | 2012 |
| Asymptotically optimal minimizers schemes G Marçais, D DeBlasio, C Kingsford Bioinformatics 34 (13), i13-i22, 2018 | 52 | 2018 |
| Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford PLoS computational biology 13 (10), e1005777, 2017 | 52 | 2017 |
| Improved design and analysis of practical minimizers H Zheng, C Kingsford, G Marçais Bioinformatics 36 (Supplement_1), i119-i127, 2020 | 48 | 2020 |
| Sketching and sublinear data structures in genomics G Marçais, B Solomon, R Patro, C Kingsford Annual Review of Biomedical Data Science 2, 93-118, 2019 | 46 | 2019 |
