| JBrowse: a dynamic web platform for genome visualization and analysis R Buels, E Yao, CM Diesh, RD Hayes, M Munoz-Torres, G Helt, ... Genome biology 17, 1-12, 2016 | 775 | 2016 |
| JBrowse 2: a modular genome browser with views of synteny and structural variation C Diesh, GJ Stevens, P Xie, T De Jesus Martinez, EA Hershberg, A Leung, ... Genome biology 24 (1), 74, 2023 | 577 | 2023 |
| The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond LA Mueller, TH Solow, N Taylor, B Skwarecki, R Buels, J Binns, C Lin, ... Plant physiology 138 (3), 1310-1317, 2005 | 577 | 2005 |
| Web Apollo: a web-based genomic annotation editing platform E Lee, GA Helt, JT Reese, MC Munoz-Torres, CP Childers, RM Buels, ... Genome biology 14, 1-13, 2013 | 398 | 2013 |
| The Sol Genomics Network (solgenomics. net): growing tomatoes using Perl A Bombarely, N Menda, IY Tecle, RM Buels, S Strickler, T Fischer-York, ... Nucleic acids research 39 (suppl_1), D1149-D1155, 2010 | 343 | 2010 |
| A snapshot of the emerging tomato genome sequence LA Mueller, RK Lankhorst, SD Tanksley, JJ Giovannoni, R White, ... The Plant Genome 2 (1), 2009 | 103 | 2009 |
| Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato E Datema, LA Mueller, R Buels, JJ Giovannoni, RGF Visser, WJ Stiekema, ... BMC Plant Biology 8, 1-16, 2008 | 39 | 2008 |
| A community-based annotation framework for linking solanaceae genomes with phenomes N Menda, RM Buels, I Tecle, LA Mueller Plant physiology 147 (4), 1788-1799, 2008 | 39 | 2008 |
| The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping data S Jung, N Menda, S Redmond, RM Buels, M Friesen, Y Bendana, ... Database 2011, bar051, 2011 | 38 | 2011 |
| FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation JT Bolleman, CJ Mungall, F Strozzi, J Baran, M Dumontier, RJP Bonnal, ... Journal of biomedical semantics 7, 1-12, 2016 | 36 | 2016 |
| The SGN comparative map viewer LA Mueller, AA Mills, B Skwarecki, RM Buels, N Menda, SD Tanksley Bioinformatics 24 (3), 422-423, 2008 | 33 | 2008 |
| SimSnap: Fast-forwarding via native execution and application-level checkpointing PK Szwed, D Marques, RM Buels, SA McKee, M Schulz Eighth Workshop on Interaction between Compilers and Computer Architectures …, 2004 | 33 | 2004 |
| solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database IY Tecle, N Menda, RM Buels, E van der Knaap, LA Mueller BMC bioinformatics 11, 1-9, 2010 | 29 | 2010 |
| JBrowseR: an R interface to the JBrowse 2 genome browser EA Hershberg, G Stevens, C Diesh, P Xie, T De Jesus Martinez, R Buels, ... Bioinformatics 37 (21), 3914-3915, 2021 | 15 | 2021 |
| JBrowse jupyter: a Python interface to JBrowse 2 T De Jesus Martinez, EA Hershberg, E Guo, GJ Stevens, C Diesh, P Xie, ... Bioinformatics 39 (1), btad032, 2023 | 5 | 2023 |
| JBrowse Connect: A server API to connect JBrowse instances and users E Yao, R Buels, L Stein, TZ Sen, I Holmes PLOS Computational Biology 16 (8), e1007261, 2020 | 2 | 2020 |
| Cram-JS: reference-based decompression in node and the browser R Buels, S Dider, C Diesh, J Robinson, I Holmes Bioinformatics 35 (21), 4451-4452, 2019 | 2 | 2019 |
| Setting Up the JBrowse 2 genome browser C Diesh, R Buels, G Stevens, C Bridge, S Cain, L Stein, I Holmes Current Protocols 4 (8), e1120, 2024 | 1 | 2024 |
| JBrowse 2: An extensible open-source platform for modern genome analysis S Cain, R Haw, C Bridge, J Zhang, R Buels, C Diesh, G Stevens, ... Cancer Research 82 (12_Supplement), 6400-6400, 2022 | 1 | 2022 |
| The SOL Genomics Network Model: Making Community Annotation Work N Menda, I Tecle, A Pujar, A Bombarely, T York, A Mills, J Gosselin, ... Nature Precedings, 1-1, 2009 | 1 | 2009 |
