Artículos con órdenes de acceso público - Anna VangoneMás información
No disponible en ningún lugar: 1
Ranking multiple docking solutions based on the conservation of inter‐residue contacts
R Oliva, A Vangone, L Cavallo
Proteins: Structure, Function, and Bioinformatics 81 (9), 1571-1584, 2013
Órdenes: Government of Italy
Disponibles en algún lugar: 22
PRODIGY: a web server for predicting the binding affinity of protein–protein complexes
LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone
Bioinformatics 32 (23), 3676-3678, 2016
Órdenes: Netherlands Organisation for Scientific Research, European Commission
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
Órdenes: US National Institutes of Health, Cancer Research UK
Large-scale prediction of binding affinity in protein–small ligand complexes: The PRODIGY-LIG web server
A Vangone, J Schaarschmidt, P Koukos, C Geng, N Citro, ME Trellet, ...
Bioinformatics 35 (9), 1585-1587, 2019
Órdenes: Netherlands Organisation for Scientific Research, European Commission
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Órdenes: US National Science Foundation, US National Institutes of Health …
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ...
Journal of computer-aided molecular design 32, 175-185, 2018
Órdenes: Netherlands Organisation for Scientific Research, European Commission
iSEE: Interface structure, evolution, and energy‐based machine learning predictor of binding affinity changes upon mutations
C Geng, A Vangone, GE Folkers, LC Xue, AMJJ Bonvin
Proteins: Structure, Function, and Bioinformatics 87 (2), 110-119, 2019
Órdenes: Netherlands Organisation for Scientific Research, European Commission
PRODIGY: a contact-based predictor of binding affinity in protein-protein complexes
A Vangone, AMJJ Bonvin
Bio-protocol 7 (3), e2124-e2124, 2017
Órdenes: European Commission
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP Van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
Órdenes: Netherlands Organisation for Scientific Research, European Commission
CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts
E Chermak, A Petta, L Serra, A Vangone, V Scarano, L Cavallo, R Oliva
Bioinformatics 31 (9), 1481-1483, 2015
Órdenes: Government of Italy
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes
B Jiménez-García, K Elez, PI Koukos, AM Bonvin, A Vangone
Bioinformatics 35 (22), 4821-4823, 2019
Órdenes: Netherlands Organisation for Scientific Research, European Commission
Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification
K Elez, AMJJ Bonvin, A Vangone
BMC bioinformatics 19, 19-28, 2018
Órdenes: Netherlands Organisation for Scientific Research, European Commission
Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes
C Geng, A Vangone, AMJJ Bonvin
Protein Engineering, Design and Selection 29 (8), 291-299, 2016
Órdenes: European Commission
D936Y and other mutations in the fusion core of the SARS-CoV-2 spike protein heptad repeat 1: frequency, geographical distribution, and structural effect
R Oliva, AR Shaikh, A Petta, A Vangone, L Cavallo
Molecules 26 (9), 2622, 2021
Órdenes: Government of Italy
An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45
PI Koukos, J Roel‐Touris, F Ambrosetti, C Geng, J Schaarschmidt, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1029-1036, 2020
Órdenes: Netherlands Organisation for Scientific Research, Fundação para a Ciência e …
Co-evolutionary distance predictions contain flexibility information
D Schwarz, G Georges, S Kelm, J Shi, A Vangone, CM Deane
Bioinformatics 38 (1), 65-72, 2022
Órdenes: UK Engineering and Physical Sciences Research Council
Fragment‐based modeling of membrane protein loops: Successes, failures, and prospects for the future
S Kelm, A Vangone, Y Choi, JP Ebejer, J Shi, CM Deane
Proteins: Structure, Function, and Bioinformatics 82 (2), 175-186, 2014
Órdenes: UK Engineering and Physical Sciences Research Council
Paratope states in solution improve structure prediction and docking
ML Fernandez-Quintero, A Vangone, JR Loeffler, CA Seidler, G Georges, ...
Structure 30 (3), 430-440. e3, 2022
Órdenes: Austrian Science Fund
Prediction of biomolecular complexes
A Vangone, R Oliva, L Cavallo, AMJJ Bonvin
From protein structure to function with bioinformatics, 265-292, 2017
Órdenes: European Commission, Government of Italy
Prevention of Vγ9Vδ2 T cell activation by a Vγ9Vδ2 TCR nanobody
RCG De Bruin, AGM Stam, A Vangone, ...
The Journal of Immunology 198 (1), 308-317, 2017
Órdenes: Netherlands Organisation for Scientific Research, Worldwide Cancer Research …
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