| Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites A Espah Borujeni, AS Channarasappa, HM Salis Nucleic acids research, gkt1139, 2013 | 559 | 2013 |
| Automated physics-based design of synthetic riboswitches from diverse RNA aptamers A Espah Borujeni, DM Mishler, J Wang, W Huso, HM Salis Nucleic acids research, gkv1289, 2015 | 185 | 2015 |
| Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences A Espah Borujeni, D Cetnar, I Farasat, A Smith, N Lundgren, HM Salis Nucleic Acids Research, gkx061, 2017 | 173 | 2017 |
| Translation initiation is controlled by RNA folding kinetics via a ribosome drafting mechanism A Espah Borujeni, HM Salis Journal of the American Chemical Society 138 (22), 7016-7023, 2016 | 164 | 2016 |
| A pressure test to make 10 molecules in 90 days: External evaluation of methods to engineer biology A Casini, FY Chang, R Eluere, AM King, EM Young, QM Dudley, A Karim, ... Journal of the American chemical Society, 2018 | 156 | 2018 |
| Dynamic control of endogenous metabolism with combinatorial logic circuits F Moser, A Espah Borujeni, AN Ghodasara, E Cameron, Y Park, CA Voigt Molecular Systems Biology 14 (11), e8605, 2018 | 123 | 2018 |
| Genome‐derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry H Taymaz‐Nikerel, A Espah Borujeni, PJT Verheijen, JJ Heijnen, ... Biotechnology and bioengineering 107 (2), 369-381, 2010 | 114 | 2010 |
| Genetic circuit characterization and debugging using RNA‐seq TE Gorochowski *, A Espah Borujeni *, Y Park *, AAK Nielsen, J Zhang, ... Molecular Systems Biology 13 (11), 952, 2017 | 105 | 2017 |
| Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage A Espah Borujeni, J Zhang, H Doosthosseini, AAK Nielsen, CA Voigt Nature Communications 11 (1), 1-18, 2020 | 66 | 2020 |
| Precision design of stable genetic circuits carried in highly‐insulated E. coli genomic landing pads Y Park, A Espah Borujeni, TE Gorochowski, J Shin, CA Voigt Molecular Systems Biology, 2020 | 66 | 2020 |
| Genetic Circuit Dynamics: Hazard and Glitch Analysis P Fontanarrosa, H Doosthosseini, A Espah Borujeni, Y Dorfan, CA Voigt, ... ACS Synthetic Biology 9 (9), 2324-2338, 2020 | 30 | 2020 |
| A data-driven method for quantifying the impact of a genetic circuit on its host A Hasnain, S Sinha, Y Dorfan, A Espah Borujeni, Y Park, P Maschhoff, ... 2019 IEEE Biomedical Circuits and Systems Conference (BioCAS), 1-4, 2019 | 22 | 2019 |
| A thermodynamic analysis of dicarboxylic acid production in microorganisms H Taymaz-Nikerel, E Jamalzadeh, A Espah Borujeni, PJT Verheijen, ... Biothermodynamics, 550-582, 2013 | 15 | 2013 |
| Prediction of whole-cell transcriptional response with machine learning M Eslami, AE Borujeni, H Eramian, M Weston, G Zheng, J Urrutia, ... Bioinformatics 38 (2), 404-409, 2022 | 13 | 2022 |
| The development of equilibrium and non-equilibrium models of translation and riboswitch regulation: Towards the automated design of cellular sensors A Espah Borujeni THE PENNSYLVANIA STATE UNIVERSITY, 2015 | 1 | 2015 |
| Automated design of synthetic bacterial small RNAs A Espah Borujeni, E Dong, HM Salis The 5th annual q-bio conference on cellular information processing, Santa Fe …, 2011 | 1 | 2011 |
| A Theoretical Analysis on Resin Injection/Compression Molding A Shojaei, A Spah Key Engineering Materials 334, 209-212, 2007 | 1 | 2007 |
| Disentangling gene expression burden identifies generalizable phenotypes induced by synthetic gene networks A Hasnain, AE Borujeni, Y Park, D Becker, P Maschhoff, J Urrutia, ... bioRxiv, 2023.06. 29.547078, 2023 | | 2023 |
| In vivo estimation of energetic parameters of a metabolic network model for substrate limited growth of E. coli H Taymaz-Nikerel, PJT Verheijen, A Espah Borujeni, JJ Heijnen, ... New Biotechnology 25, S337-S338, 2009 | | 2009 |
| 4. SYSTEMS BIOLOGY & TECHNOLOGY H Taymaz-Nikerel, PJT Verheijen, AE Borujeni, JJ Heijnen, WM van Gulik New Biotechnology 25, 2009 | | 2009 |
Howard M SalisProfessor of Biological Engineering and Chemical Engineering, Penn State UniversityDirección de correo verificada de psu.edu