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She Zhang
She Zhang
OpenEye, Cadence Molecular Sciences
Dirección de correo verificada de eyesopen.com
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Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation
MH Cheng, S Zhang, RA Porritt, M Noval Rivas, L Paschold, E Willscher, ...
Proceedings of the National Academy of Sciences 117 (41), 25254-25262, 2020
3432020
ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python
S Zhang, JM Krieger, Y Zhang, C Kaya, B Kaynak, K Mikulska-Ruminska, ...
Bioinformatics 37 (20), 3657-3659, 2021
1162021
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
Y Zhang, P Doruker, B Kaynak, S Zhang, J Krieger, H Li, I Bahar
Current Opinion in Structural Biology 62, 14-21, 2020
932020
Structure-encoded global motions and their role in mediating protein-substrate interactions
I Bahar, MH Cheng, JY Lee, C Kaya, S Zhang
Biophysical journal 109 (6), 1101-1109, 2015
632015
Curcumin modulates cannabinoid receptors in liver fibrosis in vivo and inhibits extracellular matrix expression in hepatic stellate cells by suppressing cannabinoid receptor …
Z Zhang, Y Guo, S Zhang, Y Zhang, Y Wang, W Ni, D Kong, W Chen, ...
European journal of pharmacology 721 (1-3), 133-140, 2013
632013
An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations
MH Cheng, S Zhang, RA Porritt, M Arditi, I Bahar
bioRxiv, 2020
572020
WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications
JD Russo, S Zhang, JMG Leung, AT Bogetti, JP Thompson, AJ DeGrave, ...
Journal of Chemical Theory and Computation 18 (2), 638-649, 2022
552022
Shared signature dynamics tempered by local fluctuations enables fold adaptability and specificity
S Zhang, H Li, JM Krieger, I Bahar
Molecular biology and evolution 36 (9), 2053-2068, 2019
522019
Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members
K Mikulska-Ruminska, I Shrivastava, J Krieger, S Zhang, H Li, H Bayır, ...
Journal of chemical information and modeling 59 (5), 2496-2508, 2019
412019
HiDeF: identifying persistent structures in multiscale ‘omics data
F Zheng, S Zhang, C Churas, D Pratt, I Bahar, T Ideker
Genome Biology 22 (1), 1-15, 2021
342021
Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings
N Sauerwald, S Zhang, C Kingsford, I Bahar
Nucleic acids research 45 (7), 3663-3673, 2017
302017
Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization
L Ponzoni, S Zhang, MH Cheng, I Bahar
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
282018
Mechanistic Insights into Passive Membrane Permeability of Drug-like Molecules from a Weighted Ensemble of Trajectories
S Zhang, JP Thompson, J Xia, AT Bogetti, F York, AG Skillman, LT Chong, ...
Journal of chemical information and modeling 62 (8), 1891-1904, 2022
202022
Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations
MH Cheng, L Ponzoni, T Sorkina, JY Lee, S Zhang, A Sorkin, I Bahar
Neuropharmacology 161, 107676, 2019
142019
ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution
BT Kaynak, S Zhang, I Bahar, P Doruker
Bioinformatics 37 (21), 3956–3958, 2021
132021
Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation
S Zhang, F Chen, I Bahar
Nucleic acids research 48 (3), 1131-1145, 2020
122020
Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis
Y Zhang, S Zhang, J Xing, I Bahar
The Journal of Chemical Physics 154 (19), 2021
92021
A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2. 0]
AT Bogetti, JMG Leung, JD Russo, S Zhang, JP Thompson, AS Saglam, ...
Living journal of computational molecular science 5 (1), 2023
82023
An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations. bioRxiv 2020.05. 21.109272
MH Cheng, S Zhang, RA Porritt, M Arditi, I Baha
DOI 10 (2020.05), 21.109272, 2020
52020
Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow
O Acar, S Zhang, I Bahar, AR Carvunis
PLOS Computational Biology 18 (5), e1010181, 2022
22022
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