Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations BJ O’Roak, L Vives, S Girirajan, E Karakoc, N Krumm, BP Coe, R Levy, ... Nature 485 (7397), 246-250, 2012 | 2454 | 2012 |
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders BJ O’Roak, L Vives, W Fu, JD Egertson, IB Stanaway, IG Phelps, G Carvill, ... Science 338 (6114), 1619-1622, 2012 | 1442 | 2012 |
Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules R Levy, E Borenstein Proceedings of the National Academy of Sciences 110 (31), 12804-12809, 2013 | 406 | 2013 |
A wellness study of 108 individuals using personal, dense, dynamic data clouds ND Price, AT Magis, JC Earls, G Glusman, R Levy, C Lausted, ... Nature biotechnology 35 (8), 747-756, 2017 | 398 | 2017 |
High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis S Tiwary, R Levy, P Gutenbrunner, F Salinas Soto, KK Palaniappan, ... Nature methods 16 (6), 519-525, 2019 | 258 | 2019 |
Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis O Manor, R Levy, CE Pope, HS Hayden, MJ Brittnacher, R Carr, ... Scientific reports 6 (1), 22493, 2016 | 134 | 2016 |
Emergent biosynthetic capacity in simple microbial communities HC Chiu, R Levy, E Borenstein PLOS computational biology 10 (7), e1003695, 2014 | 117 | 2014 |
Escherichia coli Dysbiosis Correlates With Gastrointestinal Dysfunction in Children With Cystic Fibrosis LR Hoffman, CE Pope, HS Hayden, S Heltshe, R Levy, S McNamara, ... Clinical infectious diseases 58 (3), 396-399, 2014 | 116 | 2014 |
NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation R Levy, R Carr, A Kreimer, S Freilich, E Borenstein BMC bioinformatics 16, 1-6, 2015 | 100 | 2015 |
Mapping the inner workings of the microbiome: genomic-and metagenomic-based study of metabolism and metabolic interactions in the human microbiome O Manor, R Levy, E Borenstein Cell metabolism 20 (5), 742-752, 2014 | 96 | 2014 |
Reverse ecology: from systems to environments and back R Levy, E Borenstein Evolutionary systems biology, 329-345, 2012 | 80 | 2012 |
Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities S Greenblum, HC Chiu, R Levy, R Carr, E Borenstein Current opinion in biotechnology 24 (4), 810-820, 2013 | 76 | 2013 |
Anaplasma phagocytophilum AptA modulates Erk1/2 signalling B Sukumaran, JE Mastronunzio, S Narasimhan, S Fankhauser, PD Uchil, ... Cellular microbiology 13 (1), 47-61, 2011 | 56 | 2011 |
Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome R Levy, AT Magis, JC Earls, O Manor, T Wilmanski, J Lovejoy, ... Proceedings of the National Academy of Sciences 117 (24), 13839-13845, 2020 | 50 | 2020 |
Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules R Levy, E Borenstein Gut Microbes 5 (2), 265-270, 2014 | 45 | 2014 |
The Shigella Spp. Type III Effector Protein OspB Is a Cysteine Protease TE Wood, KA Westervelt, JM Yoon, HD Eshleman, R Levy, H Burnes, ... Mbio 13 (3), e01270-22, 2022 | 2 | 2022 |
Artificial neural network model for prediction of mass spectrometry data of peptides or proteins K Palaniappan, P Cimermancic, R Levy US Patent 11,862,298, 2024 | | 2024 |
The Shigella type III effector protein OspB is a cysteine protease TE Wood, KA Westervelt, JM Yoon, HD Eshleman, R Levy, H Burnes, ... bioRxiv, 2021.09. 01.458261, 2021 | | 2021 |
NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation E Borenstein, S Freilich, A Kreimer, R Carr, R Levy | | 2015 |
Assembly Rules of the Microbiome R Levy | | 2015 |